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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
128 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1053923
SRR035099.1654
453380
Chlorobiota
GGT
Thr
>SRA1053957
SRR035099.16422
453380
Chlorobiota
GGT
Thr
>SRA1054176
SRR035099.76427
453380
Chlorobiota
GGT
Thr
>SRA1054359
SRR035099.115116
453380
Chlorobiota
GGT
Thr
>SRA1054376
SRR035099.118584
453380
Chlorobiota
GGT
Thr
>SRA1054529
SRR035099.156388
453380
Chlorobiota
GGT
Thr
>SRA1054531
SRR035099.156465
453380
Chlorobiota
GGT
Thr
>SRA1054548
SRR035099.159830
453380
Chlorobiota
GGT
Thr
>SRA1054564
SRR035099.164290
453380
Chlorobiota
GGT
Thr
>SRA1054592
SRR035099.169747
453380
Chlorobiota
GGT
Thr
>SRA1054610
SRR035099.172210
453380
Chlorobiota
GGT
Thr
>SRA1054650
SRR035099.181707
453380
Chlorobiota
GGT
Thr
>SRA1054652
SRR035099.181905
453380
Chlorobiota
GGT
Thr
>SRA1054659
SRR035099.182850
453380
Chlorobiota
GGT
Thr
>SRA1054685
SRR035099.188520
453380
Chlorobiota
GGT
Thr
>SRA1054700
SRR035099.190338
453380
Chlorobiota
GGT
Thr
>SRA1054747
SRR035099.205446
453380
Chlorobiota
GGT
Thr
>SRA1054760
SRR035099.207667
453380
Chlorobiota
GGT
Thr
>SRA1054845
SRR035099.228704
453380
Chlorobiota
GGT
Thr
>SRA1054034
SRR035099.38386
453381
Chlorobiota
CCA
Trp
>SRA1054177
SRR035099.76427
453381
Chlorobiota
CCA
Trp
>SRA1054220
SRR035099.86314
453381
Chlorobiota
CCA
Trp
>SRA1054254
SRR035099.93040
453381
Chlorobiota
CCA
Trp
>SRA1054308
SRR035099.103664
453381
Chlorobiota
CCA
Trp
>SRA1054360
SRR035099.115116
453381
Chlorobiota
CCA
Trp
>SRA1054530
SRR035099.156388
453381
Chlorobiota
CCA
Trp
>SRA1054549
SRR035099.159830
453381
Chlorobiota
CCA
Trp
>SRA1054593
SRR035099.169747
453381
Chlorobiota
CCA
Trp
>SRA1054653
SRR035099.181905
453381
Chlorobiota
CCA
Trp
>SRA1054660
SRR035099.182850
453381
Chlorobiota
CCA
Trp
>SRA1054686
SRR035099.188520
453381
Chlorobiota
CCA
Trp
>SRA1054748
SRR035099.205446
453381
Chlorobiota
CCA
Trp
>SRA1054846
SRR035099.228704
453381
Chlorobiota
CCA
Trp
>SRA1053936
SRR035099.8665
272483
Chlorobiota
GTG
His
>SRA1054148
SRR035099.69952
272483
Chlorobiota
GTG
His
>SRA1054152
SRR035099.70291
272483
Chlorobiota
GTG
His
>SRA1054669
SRR035099.184825
272483
Chlorobiota
GTG
His
>SRA1054027
SRR035099.37026
453379
Chlorobiota
TGT
Thr
>SRA1054032
SRR035099.38386
453379
Chlorobiota
TGT
Thr
>SRA1054045
SRR035099.42846
453379
Chlorobiota
TGT
Thr
>SRA1054078
SRR035099.52193
453379
Chlorobiota
TGT
Thr
>SRA1054255
SRR035099.93112
453379
Chlorobiota
TGT
Thr
>SRA1054357
SRR035099.115116
453379
Chlorobiota
TGT
Thr
>SRA1054374
SRR035099.118584
453379
Chlorobiota
TGT
Thr
>SRA1054562
SRR035099.164290
453379
Chlorobiota
TGT
Thr
>SRA1054608
SRR035099.172210
453379
Chlorobiota
TGT
Thr
>SRA1054648
SRR035099.181707
453379
Chlorobiota
TGT
Thr
>SRA1054657
SRR035099.182850
453379
Chlorobiota
TGT
Thr
>SRA1054683
SRR035099.188520
453379
Chlorobiota
TGT
Thr
>SRA1054698
SRR035099.190338
453379
Chlorobiota
TGT
Thr
>SRA1054758
SRR035099.207667
453379
Chlorobiota
TGT
Thr
>SRA1054843
SRR035099.228704
453379
Chlorobiota
TGT
Thr
>SRA1054859
SRR035099.236180
453379
Chlorobiota
TGT
Thr
>SRA1054003
SRR035099.31181
272557
Chlorobiota
GGG
Pro
>SRA1054036
SRR035099.39261
272557
Chlorobiota
GGG
Pro
>SRA1054048
SRR035099.43552
272557
Chlorobiota
GGG
Pro
>SRA1054109
SRR035099.59181
272557
Chlorobiota
GGG
Pro
>SRA1054278
SRR035099.98600
272557
Chlorobiota
GGG
Pro
>SRA1054827
SRR035099.224168
272557
Chlorobiota
GGG
Pro
>SRA1053970
SRR035099.20027
453483
Chlorobiota
TGG
Pro
>SRA1054311
SRR035099.104370
453483
Chlorobiota
TGG
Pro
>SRA1054456
SRR035099.135712
453483
Chlorobiota
TGG
Pro
>SRA1054492
SRR035099.146170
453483
Chlorobiota
TGG
Pro
>SRA1054605
SRR035099.171252
453483
Chlorobiota
TGG
Pro
>SRA1054781
SRR035099.210938
453483
Chlorobiota
TGG
Pro
>SRA1054871
SRR035099.241314
453483
Chlorobiota
TGG
Pro
>SRA1054008
SRR035099.33878
272771
Chlorobiota
GAT
Ile
>SRA1054194
SRR035099.81167
272771
Chlorobiota
GAT
Ile
>SRA1054268
SRR035099.96071
272771
Chlorobiota
GAT
Ile
>SRA1054276
SRR035099.97766
272771
Chlorobiota
GAT
Ile
>SRA1054302
SRR035099.102524
272771
Chlorobiota
GAT
Ile
>SRA1054340
SRR035099.109643
272771
Chlorobiota
GAT
Ile
>SRA1054412
SRR035099.128778
272771
Chlorobiota
GAT
Ile
>SRA1054450
SRR035099.135142
272771
Chlorobiota
GAT
Ile
>SRA1054472
SRR035099.139719
272771
Chlorobiota
GAT
Ile
>SRA1054538
SRR035099.158303
272771
Chlorobiota
GAT
Ile
>SRA1054707
SRR035099.191305
272771
Chlorobiota
GAT
Ile
>SRA1054735
SRR035099.201881
272771
Chlorobiota
GAT
Ile
>SRA1054816
SRR035099.221040
272771
Chlorobiota
GAT
Ile
>SRA1053931
SRR035099.5925
456494
Chlorobiota
GGC
Ala
>SRA1053986
SRR035099.26383
456494
Chlorobiota
GGC
Ala
>SRA1054107
SRR035099.58840
456494
Chlorobiota
GGC
Ala
>SRA1054264
SRR035099.95412
456494
Chlorobiota
GGC
Ala
>SRA1054567
SRR035099.164908
456494
Chlorobiota
GGC
Ala
>SRA1054597
SRR035099.170439
456494
Chlorobiota
GGC
Ala
>SRA1054628
SRR035099.177609
456494
Chlorobiota
GGC
Ala
>SRA1054639
SRR035099.180799
456494
Chlorobiota
GGC
Ala
>SRA1054671
SRR035099.185166
456494
Chlorobiota
GGC
Ala
>SRA1054713
SRR035099.193874
456494
Chlorobiota
GGC
Ala
>SRA1054784
SRR035099.212367
456494
Chlorobiota
GGC
Ala
>SRA1054840
SRR035099.228179
456494
Chlorobiota
GGC
Ala
>SRA1054231
SRR035099.89155
272734
Chlorobiota
CAT
Met
>SRA1054327
SRR035099.107773
272734
Chlorobiota
CAT
Met
>SRA1054388
SRR035099.120914
272734
Chlorobiota
CAT
Met
>SRA1054392
SRR035099.122921
272734
Chlorobiota
CAT
Met
>SRA1054552
SRR035099.160760
272734
Chlorobiota
CAT
Met
>SRA1053928
SRR035099.4232
452251
Chlorobiota
CAT
Met
>SRA1053929
SRR035099.4710
452251
Chlorobiota
CAT
Met
>SRA1053941
SRR035099.9991
452251
Chlorobiota
CAT
Met
>SRA1053943
SRR035099.10703
452251
Chlorobiota
CAT
Met
>SRA1054000
SRR035099.30629
452251
Chlorobiota
CAT
Met
>SRA1054040
SRR035099.40292
452251
Chlorobiota
CAT
Met
>SRA1054051
SRR035099.43638
452251
Chlorobiota
CAT
Met
>SRA1054092
SRR035099.54458
452251
Chlorobiota
CAT
Met
>SRA1054111
SRR035099.59467
452251
Chlorobiota
CAT
Met
>SRA1054297
SRR035099.100972
452251
Chlorobiota
CAT
Met
>SRA1054377
SRR035099.118635
452251
Chlorobiota
CAT
Met
>SRA1054872
SRR035099.242385
452251
Chlorobiota
CAT
Met
>SRA1053980
SRR035099.24068
453583
Chlorobiota
CGC
Ala
>SRA1054006
SRR035099.33218
453583
Chlorobiota
CGC
Ala
>SRA1054089
SRR035099.54354
453583
Chlorobiota
CGC
Ala
>SRA1054117
SRR035099.62528
453583
Chlorobiota
CGC
Ala
>SRA1054127
SRR035099.65846
453583
Chlorobiota
CGC
Ala
>SRA1054242
SRR035099.91526
453583
Chlorobiota
CGC
Ala
>SRA1054401
SRR035099.125308
453583
Chlorobiota
CGC
Ala
>SRA1054521
SRR035099.154279
453583
Chlorobiota
CGC
Ala
>SRA1054603
SRR035099.171088
453583
Chlorobiota
CGC
Ala
>SRA1054702
SRR035099.190412
453583
Chlorobiota
CGC
Ala
>SRA1053925
SRR035099.2440
271198
Chlorobiota
CAT
Met
>SRA1053926
SRR035099.3458
271198
Chlorobiota
CAT
Met
>SRA1053927
SRR035099.4109
271198
Chlorobiota
CAT
Met
>SRA1054664
SRR035099.183144
271198
Chlorobiota
CAT
Met
>SRA1054687
SRR035099.189005
271198
Chlorobiota
CAT
Met
>SRA1054800
SRR035099.217586
271198
Chlorobiota
CAT
Met
>SRA1054232
SRR035099.89155
453695
Chlorobiota
CCC
Gly
>SRA1054244
SRR035099.91592
453695
Chlorobiota
CCC
Gly
>SRA1054389
SRR035099.120914
453695
Chlorobiota
CCC
Gly
>SRA1054395
SRR035099.123341
453695
Chlorobiota
CCC
Gly
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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