This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euryarchaeota
Anticodon = GTC
HIT:
38 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241214 (12 seq.)
>A171002492
CP002913
Euryarchaeota
Methanococcus maripaludis X1 [CP002913]
108213
108289
+
Asp
GTC
-
¡û
>A171002494
CP002913
Euryarchaeota
Methanococcus maripaludis X1 [CP002913]
108415
108490
+
Asp
GTC
-
¡û
>At1036
CP000743
Euryarchaeota
Methanococcus aeolicus Nankai-3 [CP000743]
1377578
1377504
-
Asp
GTC
[Ensembl]
¡û
>At1038
CP000743
Euryarchaeota
Methanococcus aeolicus Nankai-3 [CP000743]
1377955
1377881
-
Asp
GTC
[Ensembl]
¡û
>At1073
CP000609
Euryarchaeota
Methanococcus maripaludis C5 [CP000609]
1517173
1517099
-
Asp
GTC
[Ensembl]
¡û
>At1075
CP000609
Euryarchaeota
Methanococcus maripaludis C5 [CP000609]
1517372
1517298
-
Asp
GTC
[Ensembl]
¡û
>At1124
BX950229
Euryarchaeota
Methanococcus maripaludis S2 [BX950229]
113418
113492
+
Asp
GTC
[Ensembl]
¡û
>At1126
BX950229
Euryarchaeota
Methanococcus maripaludis S2 [BX950229]
113620
113694
+
Asp
GTC
[Ensembl]
¡û
>W1610000324
AAWI01000002
Euryarchaeota
Methanococcus maripaludis C5 [AAWI]
308404
308327
-
Asp
GTC
[ENA]
¡û
>W1610000326
AAWI01000002
Euryarchaeota
Methanococcus maripaludis C5 [AAWI]
308205
308130
-
Asp
GTC
[ENA]
¡û
>W1610000443
AAZL01000001
Euryarchaeota
Methanococcus aeolicus Nankai-3 [AAZL]
143743
143667
-
Asp
GTC
[ENA]
¡û
>W1610000445
AAZL01000001
Euryarchaeota
Methanococcus aeolicus Nankai-3 [AAZL]
143366
143290
-
Asp
GTC
[ENA]
¡û
Identical group No.244843 (1 seq.)
>A171004051
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
1865784
1865707
-
Asp
GTC
-
¡û
Identical group No.248068 (2 seq.)
>A171005690
CP009552
Euryarchaeota
Geoglobus acetivorans SBH6 [CP009552]
960599
960523
-
Asp
GTC
-
¡û
>A171006118
CP011267
Euryarchaeota
Geoglobus ahangari 234 [CP011267]
1621766
1621841
+
Asp
GTC
-
¡û
Identical group No.250710 (10 seq.)
>A171000207
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
1834615
1834692
+
Asp
GTC
-
¡û
>A171002591
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
1007268
1007191
-
Asp
GTC
-
¡û
>A171003331
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
654102
654025
-
Asp
GTC
-
¡û
>A171003803
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
13049
12972
-
Asp
GTC
-
¡û
>A171007084
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
101321
101398
+
Asp
GTC
-
¡û
>W1910229985
FOIW01000002
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
655420
655343
-
Asp
GTC
[ENA]
¡û
>W1910597277
LANF01000011
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
102777
102854
+
Asp
GTC
[ENA]
¡û
>W1610045083
BBBB01000014
Euryarchaeota
Thermococcus celer JCM 8558 [BBBB]
22151
22074
-
Asp
GTC
[ENA]
¡û
>W1610638236
LIXN01000007
Euryarchaeota
Thermococcus thioreducens DSM 14981 [LIXN]
6530
6455
-
Asp
GTC
[ENA]
¡û
>W1610717938
LLYW01000034
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
33783
33860
+
Asp
GTC
[ENA]
¡û
Identical group No.250765 (2 seq.)
>A171001209
CP001899
Euryarchaeota
Ferroglobus placidus DSM 10642 [CP001899]
756924
756998
+
Asp
GTC
-
¡û
>W1610001589
ACYZ01000004
Euryarchaeota
Ferroglobus placidus DSM 10642 [ACYZ]
38770
38844
+
Asp
GTC
[ENA]
¡û
Identical group No.250828 (6 seq.)
>A171000476
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
619903
619980
+
Asp
GTC
-
¡û
>A171002670
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
2085793
2085870
+
Asp
GTC
-
¡û
>A171004225
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
1241016
1240939
-
Asp
GTC
-
¡û
>A171006578
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
878871
878948
+
Asp
GTC
-
¡û
>W1610000880
ABXN01000011
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
218408
218485
+
Asp
GTC
[ENA]
¡û
>W1610045155
BBBE01000001
Euryarchaeota
Thermococcus peptonophilus JCM 9653 [BBBE]
376059
375982
-
Asp
GTC
[ENA]
¡û
Identical group No.252704 (3 seq.)
>A171001881
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
1786404
1786327
-
Asp
GTC
-
¡û
>A171006478
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
2068929
2068852
-
Asp
GTC
-
¡û
>W1610000709
ABSF01000006
Euryarchaeota
Thermococcus barophilus MP [ABSF]
2833
2756
-
Asp
GTC
[ENA]
¡û
Identical group No.252711 (2 seq.)
>A171002278
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
164356
164433
+
Asp
GTC
-
¡û
>W1610005276
AJLF01000001
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
1027036
1026959
-
Asp
GTC
[ENA]
¡û
Identical group No.252738 (8 seq.)
>A171002193
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
291734
291657
-
Asp
GTC
-
¡û
>A171003278
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
1618651
1618728
+
Asp
GTC
-
¡û
>A171003359
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
1847154
1847231
+
Asp
GTC
-
¡û
>A171005894
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
1505076
1504999
-
Asp
GTC
-
¡û
>A171007509
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
1840040
1840117
+
Asp
GTC
-
¡û
>At1783
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
416131
416208
+
Asp
GTC
[Ensembl]
¡û
>At1869
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
1557852
1557775
-
Asp
GTC
[Ensembl]
¡û
>At1914
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
1518661
1518584
-
Asp
GTC
[Ensembl]
¡û
Identical group No.254686 (2 seq.)
>A179000431
CP006577
Euryarchaeota
Archaeoglobus fulgidus DSM 8774 [CP006577]
212148
212039
-
Asp
GTC
-
¡û
>At0628
AE000782
Euryarchaeota
Archaeoglobus fulgidus DSM 4304 [AE000782]
235858
235749
-
Asp
GTC
[Ensembl]
¡û
Identical group No.256469 (1 seq.)
>A171006416
CP012986
Euryarchaeota
Nanohaloarchaea archaeon SG9 [CP012986]
63742
63668
-
Asp
GTC
-
¡û
Identical group No.256671 (4 seq.)
>A171004284
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
1791608
1791685
+
Asp
GTC
-
¡û
>A171004468
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
794529
794452
-
Asp
GTC
-
¡û
>At1933
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
1769612
1769689
+
Asp
GTC
[Ensembl]
¡û
>W1610046814
BBCU01000001
Euryarchaeota
Thermococcus sp. JCM 11816 [BBCU]
143441
143516
+
Asp
GTC
[ENA]
¡û
Identical group No.258324 (1 seq.)
>At1317
AE009439
Euryarchaeota
Methanopyrus kandleri AV19 [AE009439]
657703
657626
-
Asp
GTC
[Ensembl]
¡û
Identical group No.265369 (1 seq.)
>A171003670
CP005290
Euryarchaeota
Archaeoglobus sulfaticallidus PM70-1 [CP005290]
2049140
2049065
-
Asp
GTC
-
¡û
Identical group No.268549 (1 seq.)
>A179000241
CP002588
Euryarchaeota
Archaeoglobus veneficus SNP6 [CP002588]
36551
36655
+
Asp
GTC
-
¡û
Identical group No.269527 (1 seq.)
>A171006646
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
1076040
1076117
+
Asp
GTC
-
¡û
Identical group No.337285 (2 seq.)
>A171006873
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
2244631
2244556
-
Asp
GTC
-
¡û
>W1910229716
FOCX01000031
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
21015
20940
-
Asp
GTC
[ENA]
¡û
Identical group No.456004 (8 seq.)
>A171007466
LN831302
Euryarchaeota
Halobacterium hubeiense JI20-1 [LN831302]
245146
245073
-
Asp
GTC
-
¡û
>W1610085096
CEML01000002
Euryarchaeota
Halobacterium hubeiense JI20-4 [CEML]
26891
26818
-
Asp
GTC
[ENA]
¡û
>W1610085115
CEMN01000001
Euryarchaeota
Halobacterium hubeiense JI20-3 [CEMN]
2437528
2437601
+
Asp
GTC
[ENA]
¡û
>W1610085154
CEMO01000001
Euryarchaeota
Halobacterium hubeiense JI20-2 [CEMO]
2480885
2480958
+
Asp
GTC
[ENA]
¡û
>W1610085193
CEMP01000001
Euryarchaeota
Halobacterium hubeiense JI20-6 [CEMP]
2522763
2522836
+
Asp
GTC
[ENA]
¡û
>W1610085254
CEMQ01000001
Euryarchaeota
Halobacterium hubeiense JI20-7 [CEMQ]
35706
35633
-
Asp
GTC
[ENA]
¡û
>W1610085295
CEMR01000002
Euryarchaeota
Halobacterium hubeiense JI20-5 [CEMR]
35717
35644
-
Asp
GTC
[ENA]
¡û
>W1610085336
CEMZ01000001
Euryarchaeota
Halobacterium hubeiense JI20-8 [CEMZ]
35710
35637
-
Asp
GTC
[ENA]
¡û
Identical group No.456317 (12 seq.)
>A173000349
HE964772
Euryarchaeota
Methanoculleus bourgensis MS2 MS2T [HE964772]
807815
807890
+
Asp
GTC
-
¡û
>A173000366
LT158599
Euryarchaeota
Methanoculleus bourgensis [LT158599]
828547
828622
+
Asp
GTC
-
¡û
>A173000369
LT549891
Euryarchaeota
Methanoculleus bourgensis [LT549891]
996033
996108
+
Asp
GTC
-
¡û
>At1286
CP000562
Euryarchaeota
Methanoculleus marisnigri JR1 [CP000562]
1674181
1674109
-
Asp
GTC
[Ensembl]
¡û
>W1630000035
AASI01000001
Euryarchaeota
Methanoculleus marisnigri JR1 [AASI]
54608
54532
-
Asp
GTC
[ENA]
¡û
>W1630001806
BBBH01000025
Euryarchaeota
Methanoculleus chikugoensis JCM 10825 [BBBH]
8654
8730
+
Asp
GTC
[ENA]
¡û
>W1630003199
BCNX01000003
Euryarchaeota
Methanoculleus thermophilus CR-1 [BCNX]
23834
23760
-
Asp
GTC
[ENA]
¡û
>W1630003201
BCNX01000014
Euryarchaeota
Methanoculleus thermophilus CR-1 [BCNX]
25010
25087
+
Asp
GTC
[ENA]
¡û
>W1630003202
BCNY01000008
Euryarchaeota
Methanoculleus horonobensis T10 [BCNY]
137804
137728
-
Asp
GTC
[ENA]
¡û
>W1630010472
LFRO01000023
Euryarchaeota
Methanoculleus sp. DTU007 [LFRO]
29476
29402
-
Asp
GTC
[ENA]
¡û
>W1630010473
LFRO01000050
Euryarchaeota
Methanoculleus sp. DTU007 [LFRO]
8907
8984
+
Asp
GTC
[ENA]
¡û
>W1630018562
LUYK01000046
Euryarchaeota
Methanomicrobiales archaeon Methan_07 [LUYK]
9418
9494
+
Asp
GTC
[ENA]
¡û
Identical group No.463286 (5 seq.)
>At1606
CP000254
Euryarchaeota
Methanospirillum hungatei JF-1 [CP000254]
1365368
1365440
+
Asp
GTC
[Ensembl]
¡û
>At1636
CP000254
Euryarchaeota
Methanospirillum hungatei JF-1 [CP000254]
2881740
2881668
-
Asp
GTC
[Ensembl]
¡û
>W1630000024
AALU01000010
Euryarchaeota
Methanospirillum hungatei JF-1 [AALU]
35645
35717
+
Asp
GTC
[ENA]
¡û
>W1630000026
AALU01000028
Euryarchaeota
Methanospirillum hungatei JF-1 [AALU]
10544
10472
-
Asp
GTC
[ENA]
¡û
>W1630018561
LUYJ01000224
Euryarchaeota
Methanomicrobiales archaeon Methan_06 [LUYJ]
943
1015
+
Asp
GTC
[ENA]
¡û
Identical group No.485337 (2 seq.)
>A171006906
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
670930
671002
+
Asp
GTC
-
¡û
>W1610004046
AGFZ01000017
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
8742
8670
-
Asp
GTC
[ENA]
¡û
Identical group No.485719 (2 seq.)
>A171007019
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
1034128
1034056
-
Asp
GTC
-
¡û
>A171007020
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
1032082
1032009
-
Asp
GTC
-
¡û
Identical group No.489672 (1 seq.)
>At0688
CP000780
Euryarchaeota
Methanoregula boonei 6A8 [CP000780]
1899112
1899040
-
Asp
GTC
[Ensembl]
¡û
Identical group No.524000 (6 seq.)
>A171001461
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
1624661
1624587
-
Asp
GTC
-
¡û
>A171006795
CP017921
Euryarchaeota
Methanohalophilus halophilus Z-7982 [CP017921]
1106387
1106461
+
Asp
GTC
-
¡û
>W1910228340
FNMU01000006
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
33649
33723
+
Asp
GTC
[ENA]
¡û
>W1910471822
FXBN01000002
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
132302
132228
-
Asp
GTC
[ENA]
¡û
>W1910582986
JWTK01000004
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [JWTK]
62242
62168
-
Asp
GTC
[ENA]
¡û
>W1911653202
QBKB01000002
Euryarchaeota
Methanohalophilus profundi SLHTYRO [QBKB]
1473166
1473240
+
Asp
GTC
[ENA]
¡û
Identical group No.525339 (7 seq.)
>A173000052
CP002117
Euryarchaeota
Methanolacinia petrolearia DSM 11571 [CP002117]
973553
973627
+
Asp
GTC
-
¡û
>A173000053
CP002117
Euryarchaeota
Methanolacinia petrolearia DSM 11571 [CP002117]
979064
979138
+
Asp
GTC
-
¡û
>W1630000357
AHKP01000003
Euryarchaeota
Methanoplanus limicola DSM 2279 [AHKP]
125920
125846
-
Asp
GTC
[ENA]
¡û
>W1630000358
AHKP01000003
Euryarchaeota
Methanoplanus limicola DSM 2279 [AHKP]
125094
125020
-
Asp
GTC
[ENA]
¡û
>W1630000359
AHKP01000003
Euryarchaeota
Methanoplanus limicola DSM 2279 [AHKP]
123675
123601
-
Asp
GTC
[ENA]
¡û
>W1630001034
AXDV01000014
Euryarchaeota
Methanolacinia paynteri DSM 2545 [AXDV]
6329
6255
-
Asp
GTC
[ENA]
¡û
>W1630001035
AXDV01000014
Euryarchaeota
Methanolacinia paynteri DSM 2545 [AXDV]
3197
3123
-
Asp
GTC
[ENA]
¡û
Identical group No.526234 (1 seq.)
>A171001746
CP002101
Euryarchaeota
Methanosalsum zhilinae DSM 4017 [CP002101]
95343
95269
-
Asp
GTC
-
¡û
Identical group No.528528 (2 seq.)
>At0999
CP000300
Euryarchaeota
Methanococcoides burtonii DSM 6242 [CP000300]
1415823
1415751
-
Asp
GTC
[Ensembl]
¡û
>W1610000157
AADH02000017
Euryarchaeota
Methanococcoides burtonii DSM 6242 [AADH]
37015
36941
-
Asp
GTC
[ENA]
¡û
Identical group No.551679 (1 seq.)
>A171002930
CP003243
Euryarchaeota
Methanocella conradii HZ254 [CP003243]
1392249
1392176
-
Asp
GTC
-
¡û
Identical group No.563455 (2 seq.)
>At1358
CP000477
Euryarchaeota
Methanothrix thermoacetophila PT [CP000477]
551741
551669
-
Asp
GTC
[Ensembl]
¡û
>W1610000230
AAOR01000006
Euryarchaeota
Methanothrix thermoacetophila PT [AAOR]
33239
33166
-
Asp
GTC
[ENA]
¡û
Identical group No.573233 (5 seq.)
>At1236
CP000559
Euryarchaeota
Methanocorpusculum labreanum Z [CP000559]
1381967
1381777
-
Asp
GTC
[Ensembl]
¡û
>W1630000897
AUMX01000011
Euryarchaeota
Methanocorpusculum bavaricum DSM 4179 [AUMX]
45017
44944
-
Asp
GTC
[ENA]
¡û
>W1630018556
LUYI01000002
Euryarchaeota
Methanomicrobiales archaeon Methan_05 [LUYI]
5735
5662
-
Asp
GTC
[ENA]
¡û
>W1630000898
AUMX01000011
Euryarchaeota
Methanocorpusculum bavaricum DSM 4179 [AUMX]
44900
44826
-
Asp
GTC
[ENA]
¡û
>W1630018557
LUYI01000002
Euryarchaeota
Methanomicrobiales archaeon Methan_05 [LUYI]
5618
5544
-
Asp
GTC
[ENA]
¡û
Identical group No.594124 (1 seq.)
>A171000060
AP011532
Euryarchaeota
Methanocella paludicola SANAE [AP011532]
2006590
2006663
+
Asp
GTC
-
¡û
Identical group No.603267 (1 seq.)
>A171001620
CP002069
Euryarchaeota
Methanohalobium evestigatum Z-7303 [CP002069]
2203534
2203608
+
Asp
GTC
-
¡û
Identical group No.603286 (1 seq.)
>A173000092
CP003167
Euryarchaeota
Methanoregula formicica SMSP [CP003167]
1126741
1126815
+
Asp
GTC
-
¡û
Identical group No.620861 (2 seq.)
>A173000017
CP001338
Euryarchaeota
Methanosphaerula palustris E1-9c [CP001338]
2241440
2241515
+
Asp
GTC
-
¡û
>W1630000082
ABZB01000002
Euryarchaeota
Methanosphaerula palustris palustris E1-9c [ABZB]
158432
158508
+
Pseudo
GTC
[ENA]
¡û
Identical group No.647529 (1 seq.)
>A171002744
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
1858409
1858482
+
Asp
GTC
-
¡û
Identical group No.673264 (4 seq.)
>A171002035
CP002551
Euryarchaeota
Methanobacterium lacus AL-21 [CP002551]
2442638
2442565
-
Asp
GTC
-
¡û
>A171002238
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
262057
262130
+
Asp
GTC
-
¡û
>A171007650
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
266514
266587
+
Asp
GTC
-
¡û
>W1910575086
JQLY01000001
Euryarchaeota
Methanobacterium sp. SMA-27 [JQLY]
105906
105979
+
Asp
GTC
[ENA]
¡û
Identical group No.713271 (1 seq.)
>A171006083
CP011266
Euryarchaeota
Methanobrevibacter millerae SM9 [CP011266]
2050932
2050860
-
Asp
GTC
-
¡û
Identical group No.720684 (1 seq.)
>A171001815
CP002278
Euryarchaeota
Methanothermus fervidus DSM 2088 [CP002278]
638783
638709
-
Asp
GTC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK