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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = CGA
HIT:
18 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.9874 (6 seq.)
>W1711137582
LVBP01000023
Synergistota
Synergistales bacterium Syner_02 [LVBP]
94
1
-
Ser
CGA
[ENA]
¡û
>W131215391
ATUZ01000006
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 [ATUZ]
11975
12068
+
Ser
CGA
[ENA]
¡û
>WENV181525338
OGHJ01000163
[OGHJ] metagenome; Human gut stool
11842
11935
+
Ser
CGA
[ENA]
¢þ
>C191149675
CP036295
Thermodesulfobacteriota
Desulfovibrio desulfuricans IC1 [CP036295]
508963
509056
+
Ser
CGA
-
¡û
>W1610948702
LVBP01000023
Synergistota
Synergistales bacterium Syner_02 [LVBP]
94
1
-
Ser
CGA
[ENA]
¡û
>W1710515612
FNBX01000014
Thermodesulfobacteriota
Desulfovibrio legallii [FNBX]
4917
4824
-
Ser
CGA
[ENA]
¡û
Identical group No.12625 (5 seq.)
>WENV170967216
MTKW01000515
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
72009
72101
+
Ser
CGA
[ENA]
¢þ
>WENV170971374
MTKX01004540
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
172659
172751
+
Ser
CGA
[ENA]
¢þ
>WENV170974424
MTKY01060955
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
299
207
-
Ser
CGA
[ENA]
¢þ
>WENV170977391
MTKZ01022312
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
73934
73842
-
Ser
CGA
[ENA]
¢þ
>C121005700
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
1243804
1243712
-
Ser
CGA
[Ensembl]
¡û
Identical group No.12629 (9 seq.)
>WENV170008046
AMZC01000589
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
2726
2818
+
Ser
CGA
[ENA]
¢þ
>WENV170563484
CZCB01019761
[CZCB] anaerobic digester metagenome; anaerobic digester
98
6
-
Ser
CGA
[ENA]
¢þ
>WENV170563585
CZCB01022102
[CZCB] anaerobic digester metagenome; anaerobic digester
775
683
-
Ser
CGA
[ENA]
¢þ
>WENV170687034
LFRM01174037
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
7098
7190
+
Ser
CGA
[ENA]
¢þ
>WENV170689417
LFRM01293515
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
506
598
+
Ser
CGA
[ENA]
¢þ
>WENV170717098
LSQX01024469
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
14779
14871
+
Ser
CGA
[ENA]
¢þ
>WENV170967933
MTKW01004494
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
19451
19543
+
Ser
CGA
[ENA]
¢þ
>C121008075
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
1414688
1414596
-
Ser
CGA
[Ensembl]
¡û
>W1710594069
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
1745002
1745094
+
Ser
CGA
[ENA]
¡û
Identical group No.13109 (16 seq.)
>C171050549
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
2211562
2211654
+
Ser
CGA
-
¡û
>WENV181909040
OGYB01006550
[OGYB] human gut metagenome; faeces
839
747
-
Ser
CGA
[ENA]
¢þ
>WENV181915150
OGYF01003453
[OGYF] human gut metagenome; faeces
8743
8651
-
Ser
CGA
[ENA]
¢þ
>WENV181980491
OHAF01040258
[OHAF] human gut metagenome; faeces
812
904
+
Ser
CGA
[ENA]
¢þ
>WENV182031158
OHCS01003842
[OHCS] human gut metagenome; feces
1668
1760
+
Ser
CGA
[ENA]
¢þ
>WENV182172642
OHMY01026917
[OHMY] human gut metagenome; feces
827
919
+
Ser
CGA
[ENA]
¢þ
>WENV182212771
OHQG01006785
[OHQG] human gut metagenome; feces
195
287
+
Ser
CGA
[ENA]
¢þ
>WENV182216006
OHQM01011219
[OHQM] human gut metagenome; feces
1772
1680
-
Ser
CGA
[ENA]
¢þ
>WENV182220742
OHQS01005523
[OHQS] human gut metagenome; feces
250
342
+
Ser
CGA
[ENA]
¢þ
>WENV182537880
OIXH01022791
[OIXH] human gut metagenome; faeces
2036
2128
+
Ser
CGA
[ENA]
¢þ
>WENV182881972
OKSA01071785
[OKSA] human gut metagenome; faeces
581
673
+
Ser
CGA
[ENA]
¢þ
>WENV182884009
OKSB01107151
[OKSB] human gut metagenome; faeces
490
398
-
Ser
CGA
[ENA]
¢þ
>WENV182892149
OKSH01022353
[OKSH] human gut metagenome; faeces
1316
1408
+
Ser
CGA
[ENA]
¢þ
>WENV183039868
OLGB01022035
[OLGB] human gut metagenome; faeces
248
156
-
Ser
CGA
[ENA]
¢þ
>W141452020
JFBR01000001
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
1196690
1196598
-
Ser
CGA
[ENA]
¡û
>W121000476
ACUH01000045
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
1283
1191
-
Ser
CGA
[ENA]
¡û
Identical group No.13634 (1 seq.)
>W1712039363
NFJQ01000002
Synergistota
Cloacibacillus sp. An23 [NFJQ]
70319
70227
-
Ser
CGA
[ENA]
¡û
Identical group No.13706 (4 seq.)
>W1711629571
MPPC01000024
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
177877
177969
+
Ser
CGA
[ENA]
¡û
>W141278993
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
955148
955240
+
Ser
CGA
[ENA]
¡û
>WENV170719190
LSQX01104951
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
71426
71518
+
Ser
CGA
[ENA]
¢þ
>C10100324
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
1252054
1251962
-
Ser
CGA
[Ensembl]
¡û
Identical group No.13753 (6 seq.)
>W141701216
JMKI01000047
Synergistota
Synergistes jonesii [JMKI]
84299
84207
-
Ser
CGA
[ENA]
¡û
>W1710629257
JPZQ01000056
Synergistota
Synergistes jonesii [JPZQ]
83468
83376
-
Ser
CGA
[ENA]
¡û
>W1710629307
JPZR01000047
Synergistota
Synergistes jonesii [JPZR]
792
700
-
Ser
CGA
[ENA]
¡û
>W1710629349
JPZS01000049
Synergistota
Synergistes jonesii [JPZS]
56607
56515
-
Ser
CGA
[ENA]
¡û
>W1710631826
JQEK01000023
Synergistota
Synergistes jonesii [JQEK]
83471
83379
-
Ser
CGA
[ENA]
¡û
>W1710631891
JQEL01000049
Synergistota
Synergistes jonesii [JQEL]
83468
83376
-
Ser
CGA
[ENA]
¡û
Identical group No.14172 (3 seq.)
>WENV170676929
LDZS01003215
[LDZS] terrestrial metagenome; oil reservoir sample K3
11598
11690
+
Ser
CGA
[ENA]
¢þ
>W1610613297
LGFQ01000035
Synergistota
Synergistales bacterium 54_24 [LGFQ]
11598
11690
+
Ser
CGA
[ENA]
¡û
>W1710734504
LGFQ01000035
Synergistota
Synergistales bacterium 54_24 [LGFQ]
11598
11690
+
Ser
CGA
[ENA]
¡û
Identical group No.14175 (6 seq.)
>WENV170677149
LDZT01003252
[LDZT] terrestrial metagenome; oil reservoir sample SB1
7440
7348
-
Ser
CGA
[ENA]
¢þ
>WENV170679053
LDZU01006809
[LDZU] terrestrial metagenome; oil reservoir sample SB2
2923
2831
-
Ser
CGA
[ENA]
¢þ
>W1610613610
LGGB01000004
Synergistota
Synergistales bacterium 53_16 [LGGB]
7440
7348
-
Ser
CGA
[ENA]
¡û
>W1610614500
LGHG01000060
Synergistota
Synergistales bacterium 54_9 [LGHG]
2923
2831
-
Ser
CGA
[ENA]
¡û
>W1710734782
LGGB01000004
Synergistota
Synergistales bacterium 53_16 [LGGB]
7440
7348
-
Ser
CGA
[ENA]
¡û
>W1710735481
LGHG01000060
Synergistota
Synergistales bacterium 54_9 [LGHG]
2923
2831
-
Ser
CGA
[ENA]
¡û
Identical group No.15541 (2 seq.)
>W11138594
AEIV01000001
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
1243983
1244075
+
Ser
CGA
[ENA]
¡û
>W121031643
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
1092930
1092838
-
Ser
CGA
[ENA]
¡û
Identical group No.16241 (4 seq.)
>W1711137635
LVBQ01000098
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
234
142
-
Ser
CGA
[ENA]
¡û
>WENV170685914
LFRM01115407
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
746
654
-
Ser
CGA
[ENA]
¢þ
>WENV170689388
LFRM01292268
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
4
96
+
Ser
CGA
[ENA]
¢þ
>W1610948755
LVBQ01000098
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
234
142
-
Ser
CGA
[ENA]
¡û
Identical group No.16802 (2 seq.)
>W09126638
ACJX01000213
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
98230
98138
-
Ser
CGA
[ENA]
¡û
>W1710530823
FNPD01000002
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
101290
101198
-
Ser
CGA
[ENA]
¡û
Identical group No.18597 (3 seq.)
>WENV181409164
OGCI01000019
[OGCI] hot springs metagenome; Hot spring water
60582
60490
-
Ser
CGA
[ENA]
¢þ
>W09110160
ABUW01000011
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
9735
9827
+
Ser
CGA
[ENA]
¡û
>C10112972
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
771234
771326
+
Ser
CGA
[Ensembl]
¡û
Identical group No.18935 (1 seq.)
>W141278974
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
977327
977235
-
Ser
CGA
[ENA]
¡û
Identical group No.38657 (4 seq.)
>WENV183712751
PDWI01112683
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
879
969
+
Ser
CGA
[ENA]
¢þ
>WENV170657143
JTFO01091284
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
922
832
-
Ser
CGA
[ENA]
¢þ
>W09108928
ABTR01000008
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
30863
30773
-
Ser
CGA
[ENA]
¡û
>W1710608693
FXBB01000013
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
4825
4915
+
Ser
CGA
[ENA]
¡û
Identical group No.53854 (12 seq.)
>WENV180728646
ODGU01075038
[ODGU] human metagenome; G_DNA_Supragingival plaque
660
571
-
Ser
CGA
[ENA]
¢þ
>WENV180732028
ODGW01078951
[ODGW] human metagenome; G_DNA_Supragingival plaque
131
42
-
Ser
CGA
[ENA]
¢þ
>WENV180789173
ODIS01291020
[ODIS] human metagenome; G_DNA_Supragingival plaque
154
243
+
Ser
CGA
[ENA]
¢þ
>WENV180797903
ODJB01157201
[ODJB] human metagenome; G_DNA_Supragingival plaque
257
168
-
Ser
CGA
[ENA]
¢þ
>WENV180809438
ODJK01017521
[ODJK] human metagenome; G_DNA_Subgingival plaque
385
296
-
Ser
CGA
[ENA]
¢þ
>WENV180944485
ODUC01019409
[ODUC] human metagenome; G_DNA_Supragingival plaque
1801
1890
+
Ser
CGA
[ENA]
¢þ
>WENV180981644
ODVE01039250
[ODVE] human metagenome; G_DNA_Supragingival plaque
661
572
-
Ser
CGA
[ENA]
¢þ
>WENV181076306
OEAP01003562
[OEAP] human metagenome; G_DNA_Supragingival plaque
1728
1817
+
Ser
CGA
[ENA]
¢þ
>WENV181081996
OEAS01534898
[OEAS] human metagenome; G_DNA_Supragingival plaque
3
92
+
Ser
CGA
[ENA]
¢þ
>WENV181091894
OEBC01118885
[OEBC] human metagenome; G_DNA_Supragingival plaque
110
21
-
Ser
CGA
[ENA]
¢þ
>WENV183507964
OMGZ01002971
[OMGZ] human oral metagenome; human oral
373
462
+
Ser
CGA
[ENA]
¢þ
>C161104026
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
1280564
1280653
+
Ser
CGA
-
¡û
Identical group No.57156 (5 seq.)
>W1711744514
MUHX01000033
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
27535
27446
-
Ser
CGA
[ENA]
¡û
>WENV181989575
OHAO01017414
[OHAO] human gut metagenome; faeces
614
703
+
Ser
CGA
[ENA]
¢þ
>WENV183764129
PPYE01315554
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
809
720
-
Ser
CGA
[ENA]
¢þ
>W10113025
ADFP01000051
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
4526
4437
-
Ser
CGA
[ENA]
¡û
>W11116252
ADFP01000051
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
4526
4437
-
Ser
CGA
[ENA]
¡û
Identical group No.58832 (3 seq.)
>W141146870
AWWC01000022
Synergistota
Jonquetella sp. BV3C21 [AWWC]
43548
43459
-
Ser
CGA
[ENA]
¡û
>W09132967
ACOO02000021
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
10535
10624
+
Ser
CGA
[ENA]
¡û
>W121017491
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
250138
250227
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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