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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
41 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170726354
LSQX01376536
275457
Gammaproteobacteria
ACG
Arg
>WENV170719454
LSQX01115316
451915
Gammaproteobacteria
TGC
Ala
>WENV170724911
LSQX01323413
451915
Gammaproteobacteria
TGC
Ala
>WENV170721698
LSQX01201010
30323
Gammaproteobacteria
GCT
Ser
>WENV170725651
LSQX01350985
30323
Gammaproteobacteria
GCT
Ser
>WENV170726353
LSQX01376536
30323
Gammaproteobacteria
GCT
Ser
>WENV170725027
LSQX01328096
503285
Gammaproteobacteria
TTT
Lys
>WENV170725035
LSQX01328280
456706
Gammaproteobacteria
TGT
Thr
>WENV170724855
LSQX01321140
282481
Gammaproteobacteria
CCG
Arg
>WENV170724025
LSQX01289889
451841
Gammaproteobacteria
GGC
Ala
>WENV170721797
LSQX01203792
472378
Gammaproteobacteria
CGC
Ala
>WENV170720152
LSQX01143189
274198
Gammaproteobacteria
GTG
His
>WENV170719257
LSQX01107573
451640
Gammaproteobacteria
TTC
Glu
>WENV170725999
LSQX01364291
653944
Gammaproteobacteria
GCC
Gly
>WENV170724709
LSQX01315645
452597
Gammaproteobacteria
TTG
Gln
>WENV170720823
LSQX01167952
275462
Gammaproteobacteria
TCT
Arg
>WENV170723303
LSQX01263552
271615
Gammaproteobacteria
GAT
Ile
>WENV170717712
LSQX01046831
456511
Gammaproteobacteria
GAA
Phe
>WENV170724399
LSQX01304152
456511
Gammaproteobacteria
GAA
Phe
>WENV170726056
LSQX01365869
185697
Gammaproteobacteria
GAG
Leu
>WENV170720005
LSQX01137234
112307
Gammaproteobacteria
CAA
Leu
>WENV170722285
LSQX01224050
293721
Gammaproteobacteria
GGG
Pro
>WENV170719692
LSQX01123420
293721
Gammaproteobacteria
GGG
Pro
>WENV170717881
LSQX01053036
454110
Gammaproteobacteria
GGT
Thr
>WENV170721173
LSQX01181864
454110
Gammaproteobacteria
GGT
Thr
>WENV170718432
LSQX01075355
456510
Gammaproteobacteria
GGC
Ala
>WENV170725443
LSQX01342625
456510
Gammaproteobacteria
GGC
Ala
>WENV170724593
LSQX01311435
490607
Gammaproteobacteria
CGT
Thr
>WENV170720809
LSQX01167195
655007
Gammaproteobacteria
CTG
Gln
>WENV170722975
LSQX01250088
655007
Gammaproteobacteria
CTG
Gln
>WENV170725022
LSQX01327958
474623
Gammaproteobacteria
GGT
Thr
>WENV170718021
LSQX01058405
218041
Gammaproteobacteria
GTA
Tyr
>WENV170723304
LSQX01263552
452602
Gammaproteobacteria
TGC
Ala
>WENV170719453
LSQX01115316
270929
Gammaproteobacteria
GAT
Ile
>WENV170716491
LSQX01001148
455293
Gammaproteobacteria
TTT
Lys
>WENV170720003
LSQX01137090
455293
Gammaproteobacteria
TTT
Lys
>WENV170720194
LSQX01144429
455293
Gammaproteobacteria
TTT
Lys
>WENV170721613
LSQX01196981
452600
Gammaproteobacteria
GTT
Asn
>WENV170720030
LSQX01138090
275288
Gammaproteobacteria
GTC
Asp
>WENV170725279
LSQX01337062
275288
Gammaproteobacteria
GTC
Asp
>WENV170720784
LSQX01166183
452601
Gammaproteobacteria
TTT
Lys
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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