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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
80 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1014564
SRR023845.201923
52786
Alphaproteobacteria
CGA
Ser
>SRA1014951
SRR023845.395323
456891
Alphaproteobacteria
CGT
Thr
>SRA1014294
SRR023845.77376
780161
Alphaproteobacteria
GCA
Cys
>SRA1014331
SRR023845.92155
780161
Alphaproteobacteria
GCA
Cys
>SRA1015126
SRR023845.469183
780161
Alphaproteobacteria
GCA
Cys
>SRA1015223
SRR023845.505925
780161
Alphaproteobacteria
GCA
Cys
>SRA1014180
SRR023845.30025
299732
Alphaproteobacteria
ACG
Arg
>SRA1014306
SRR023845.83324
299732
Alphaproteobacteria
ACG
Arg
>SRA1014316
SRR023845.86860
299732
Alphaproteobacteria
ACG
Arg
>SRA1014455
SRR023845.147632
299732
Alphaproteobacteria
ACG
Arg
>SRA1014708
SRR023845.274457
299732
Alphaproteobacteria
ACG
Arg
>SRA1014798
SRR023845.319092
299732
Alphaproteobacteria
ACG
Arg
>SRA1014806
SRR023845.321104
299732
Alphaproteobacteria
ACG
Arg
>SRA1014849
SRR023845.343118
299732
Alphaproteobacteria
ACG
Arg
>SRA1014939
SRR023845.390992
299732
Alphaproteobacteria
ACG
Arg
>SRA1015013
SRR023845.423620
299732
Alphaproteobacteria
ACG
Arg
>SRA1015032
SRR023845.426310
299732
Alphaproteobacteria
ACG
Arg
>SRA1015043
SRR023845.433965
299732
Alphaproteobacteria
ACG
Arg
>SRA1015107
SRR023845.463803
299732
Alphaproteobacteria
ACG
Arg
>SRA1015112
SRR023845.464400
299732
Alphaproteobacteria
ACG
Arg
>SRA1015247
SRR023845.519248
299732
Alphaproteobacteria
ACG
Arg
>SRA1014166
SRR023845.23678
667632
Alphaproteobacteria
GGT
Thr
>SRA1014950
SRR023845.394694
667632
Alphaproteobacteria
GGT
Thr
>SRA1014530
SRR023845.186302
45932
Alphaproteobacteria
GGA
Ser
>SRA1014579
SRR023845.208726
45932
Alphaproteobacteria
GGA
Ser
>SRA1014677
SRR023845.258071
45932
Alphaproteobacteria
GGA
Ser
>SRA1014726
SRR023845.284720
45932
Alphaproteobacteria
GGA
Ser
>SRA1015253
SRR023845.520122
45932
Alphaproteobacteria
GGA
Ser
>SRA1015274
SRR023845.535693
45932
Alphaproteobacteria
GGA
Ser
>SRA1015282
SRR023845.539099
45932
Alphaproteobacteria
GGA
Ser
>SRA1014159
SRR023845.22356
655018
Alphaproteobacteria
TTC
Glu
>SRA1014284
SRR023845.70653
655018
Alphaproteobacteria
TTC
Glu
>SRA1014398
SRR023845.120628
655018
Alphaproteobacteria
TTC
Glu
>SRA1014521
SRR023845.179812
655018
Alphaproteobacteria
TTC
Glu
>SRA1015228
SRR023845.508007
655018
Alphaproteobacteria
TTC
Glu
>SRA1014337
SRR023845.94447
454638
Alphaproteobacteria
GTT
Asn
>SRA1015103
SRR023845.461883
13460
Alphaproteobacteria
GCT
Ser
>SRA1014442
SRR023845.144308
453948
Alphaproteobacteria
GGC
Ala
>SRA1014492
SRR023845.163759
453948
Alphaproteobacteria
GGC
Ala
>SRA1014609
SRR023845.226132
453948
Alphaproteobacteria
GGC
Ala
>SRA1015073
SRR023845.448435
453948
Alphaproteobacteria
GGC
Ala
>SRA1015286
SRR023845.541943
453948
Alphaproteobacteria
GGC
Ala
>SRA1014141
SRR023845.16132
270887
Alphaproteobacteria
TGG
Pro
>SRA1014330
SRR023845.91857
273554
Alphaproteobacteria
CCG
Arg
>SRA1014444
SRR023845.144546
273554
Alphaproteobacteria
CCG
Arg
>SRA1014556
SRR023845.197854
273554
Alphaproteobacteria
CCG
Arg
>SRA1014603
SRR023845.220906
273554
Alphaproteobacteria
CCG
Arg
>SRA1014980
SRR023845.408711
273554
Alphaproteobacteria
CCG
Arg
>SRA1015011
SRR023845.421866
273554
Alphaproteobacteria
CCG
Arg
>SRA1015097
SRR023845.459061
273554
Alphaproteobacteria
CCG
Arg
>SRA1015135
SRR023845.472873
273554
Alphaproteobacteria
CCG
Arg
>SRA1014324
SRR023845.89083
276129
Alphaproteobacteria
CAT
Met
>SRA1014615
SRR023845.228543
452755
Alphaproteobacteria
TAC
Val
>SRA1014644
SRR023845.239045
452755
Alphaproteobacteria
TAC
Val
>SRA1015003
SRR023845.420264
452755
Alphaproteobacteria
TAC
Val
>SRA1015050
SRR023845.436617
452755
Alphaproteobacteria
TAC
Val
>SRA1015053
SRR023845.441448
454642
Alphaproteobacteria
TAC
Val
>SRA1014548
SRR023845.193770
786788
Alphaproteobacteria
CTG
Gln
>SRA1014791
SRR023845.316637
457259
Alphaproteobacteria
TGT
Thr
>SRA1014816
SRR023845.325393
482436
Alphaproteobacteria
TGT
Thr
>SRA1014268
SRR023845.66785
12502
Alphaproteobacteria
GCT
Ser
>SRA1015092
SRR023845.457281
270896
Alphaproteobacteria
CCG
Arg
>SRA1014936
SRR023845.390250
273160
Alphaproteobacteria
ACG
Arg
>SRA1014111
SRR023845.4021
780162
Alphaproteobacteria
TCC
Gly
>SRA1014272
SRR023845.66897
780162
Alphaproteobacteria
TCC
Gly
>SRA1014717
SRR023845.278298
780162
Alphaproteobacteria
TCC
Gly
>SRA1014790
SRR023845.316249
780162
Alphaproteobacteria
TCC
Gly
>SRA1015067
SRR023845.446579
780162
Alphaproteobacteria
TCC
Gly
>SRA1014204
SRR023845.38072
452258
Alphaproteobacteria
CAT
Met
>SRA1014213
SRR023845.41383
283396
Alphaproteobacteria
GAT
Ile
>SRA1014305
SRR023845.82783
283396
Alphaproteobacteria
GAT
Ile
>SRA1014652
SRR023845.242059
283396
Alphaproteobacteria
GAT
Ile
>SRA1014845
SRR023845.340814
283396
Alphaproteobacteria
GAT
Ile
>SRA1015244
SRR023845.517270
655031
Alphaproteobacteria
CAC
Val
>SRA1014736
SRR023845.288735
274191
Alphaproteobacteria
TCT
Arg
>SRA1014297
SRR023845.79126
654998
Alphaproteobacteria
GCC
Gly
>SRA1014872
SRR023845.355022
653539
Alphaproteobacteria
GAC
Val
>SRA1014526
SRR023845.184615
779636
Alphaproteobacteria
CTG
Gln
>SRA1014336
SRR023845.94116
454361
Alphaproteobacteria
CCA
Trp
>SRA1014113
SRR023845.4838
653593
Alphaproteobacteria
GCC
Gly
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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