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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
49 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170476807
CEVI01215416
160199
Alphaproteobacteria
GGG
Pro
>WENV170476638
CEVI01149264
34302
Alphaproteobacteria
TGA
Ser
>WENV170476282
CEVI01093579
160802
Alphaproteobacteria
TGG
Pro
>WENV170476802
CEVI01214329
88860
Alphaproteobacteria
TAA
Leu
>WENV170476396
CEVI01106575
202800
Alphaproteobacteria
ACG
Arg
>WENV170476529
CEVI01119907
369984
Alphaproteobacteria
TTG
Gln
>WENV170476530
CEVI01120030
195158
Alphaproteobacteria
GTC
Asp
>WENV170476375
CEVI01105015
370165
Alphaproteobacteria
TTC
Glu
>WENV170476541
CEVI01121260
214179
Alphaproteobacteria
CCT
Arg
>WENV170476663
CEVI01158699
313530
Alphaproteobacteria
CGC
Ala
>WENV170475993
CEVI01058307
448544
Alphaproteobacteria
CTG
Gln
>WENV170476267
CEVI01091524
448544
Alphaproteobacteria
CTG
Gln
>WENV170476621
CEVI01137318
160319
Alphaproteobacteria
TCT
Arg
>WENV170476675
CEVI01163139
160313
Alphaproteobacteria
>WENV170476156
CEVI01077638
259585
Alphaproteobacteria
CCA
Trp
>WENV170476721
CEVI01181110
175228
Alphaproteobacteria
CAT
Met
>WENV170476302
CEVI01094597
26668
Alphaproteobacteria
GCT
Ser
>WENV170476477
CEVI01115584
169712
Alphaproteobacteria
TGG
Pro
>WENV170476324
CEVI01097733
159281
Alphaproteobacteria
GTG
His
>WENV170476207
CEVI01083333
469905
Alphaproteobacteria
CCC
Gly
>WENV170475940
CEVI01052663
259563
Alphaproteobacteria
GGC
Ala
>WENV170475670
CEVI01022529
383286
Alphaproteobacteria
GGT
Thr
>WENV170475627
CEVI01018210
448545
Alphaproteobacteria
>WENV170476015
CEVI01060774
448545
Alphaproteobacteria
>WENV170476070
CEVI01067743
159287
Alphaproteobacteria
CGG
Pro
>WENV170476829
CEVI01219807
259213
Alphaproteobacteria
GGC
Ala
>WENV170475808
CEVI01036689
169670
Alphaproteobacteria
ACG
Arg
>WENV170476549
CEVI01122183
382630
Alphaproteobacteria
GAC
Val
>WENV170476193
CEVI01081491
161060
Alphaproteobacteria
ACG
Arg
>WENV170476522
CEVI01118826
160575
Alphaproteobacteria
CCT
Arg
>WENV170476280
CEVI01093379
369406
Alphaproteobacteria
GAC
Val
>WENV170476521
CEVI01118825
238723
Alphaproteobacteria
GTG
His
>WENV170476357
CEVI01102216
67024
Alphaproteobacteria
TAA
Leu
>WENV170476390
CEVI01106104
400075
Alphaproteobacteria
CAC
Val
>WENV170475854
CEVI01041391
312060
Alphaproteobacteria
CGT
Thr
>WENV170475677
CEVI01023328
382308
Alphaproteobacteria
GAA
Phe
>WENV170476378
CEVI01105100
309182
Alphaproteobacteria
TAC
Val
>WENV170476268
CEVI01091682
89275
Alphaproteobacteria
GAG
Leu
>WENV170476592
CEVI01126274
161303
Alphaproteobacteria
TCT
Arg
>WENV170475800
CEVI01035180
169247
Alphaproteobacteria
CCT
Arg
>WENV170476389
CEVI01106047
26236
Alphaproteobacteria
CGA
Ser
>WENV170475507
CEVI01006788
65064
Alphaproteobacteria
GAG
Leu
>WENV170476469
CEVI01114686
65064
Alphaproteobacteria
GAG
Leu
>WENV170476617
CEVI01136470
262836
Alphaproteobacteria
TAC
Val
>WENV170476456
CEVI01113096
259212
Alphaproteobacteria
TGT
Thr
>WENV170476367
CEVI01103589
27338
Alphaproteobacteria
CGA
Ser
>WENV170476235
CEVI01088683
88722
Alphaproteobacteria
CAG
Leu
>WENV170475893
CEVI01047546
32799
Alphaproteobacteria
GGA
Ser
>WENV170476095
CEVI01070358
231929
Alphaproteobacteria
ACG
Arg
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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