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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
50 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV183727997
PJTP01014018
349303
Alphaproteobacteria
GCC
Gly
>WENV183727853
PJTP01001299
24760
Alphaproteobacteria
TGA
Ser
>WENV183727961
PJTP01010350
24760
Alphaproteobacteria
TGA
Ser
>WENV183727519
PJTP01000009
268154
Alphaproteobacteria
TGT
Thr
>WENV183727463
PJTP01000003
146819
Alphaproteobacteria
TTT
Lys
>WENV183727454
PJTP01000002
237800
Alphaproteobacteria
>WENV183727461
PJTP01000002
254294
Alphaproteobacteria
>WENV183727867
PJTP01001803
254294
Alphaproteobacteria
>WENV183728162
PJTP01052373
241021
Alphaproteobacteria
GGC
Ala
>WENV183727471
PJTP01000004
147152
Alphaproteobacteria
ACG
Arg
>WENV183727721
PJTP01000098
23605
Alphaproteobacteria
CGA
Ser
>WENV183728066
PJTP01026793
59373
Alphaproteobacteria
CAG
Leu
>WENV183727514
PJTP01000009
95916
Alphaproteobacteria
TAG
Leu
>WENV183727926
PJTP01006543
25534
Alphaproteobacteria
CGA
Ser
>WENV183728083
PJTP01029547
146858
Alphaproteobacteria
TCT
Arg
>WENV183728137
PJTP01043161
119536
Alphaproteobacteria
TAG
Leu
>WENV183727579
PJTP01000024
339434
Alphaproteobacteria
CCC
Gly
>WENV183728142
PJTP01044089
239295
Alphaproteobacteria
CAT
Met
>WENV183728011
PJTP01016723
340310
Alphaproteobacteria
CAC
Val
>WENV183728104
PJTP01034117
338496
Alphaproteobacteria
CAT
Met
>WENV183727518
PJTP01000009
146820
Alphaproteobacteria
CGG
Pro
>WENV183727938
PJTP01007774
243803
Alphaproteobacteria
CAT
Met
>WENV183727449
PJTP01000002
243803
Alphaproteobacteria
CAT
Met
>WENV183727505
PJTP01000008
146818
Alphaproteobacteria
CAT
Met
>WENV183727956
PJTP01009856
266911
Alphaproteobacteria
GAA
Phe
>WENV183728005
PJTP01015215
253273
Alphaproteobacteria
CTT
Lys
>WENV183727513
PJTP01000009
153154
Alphaproteobacteria
TAC
Val
>WENV183727468
PJTP01000003
339432
Alphaproteobacteria
GTT
Asn
>WENV183728022
PJTP01018462
167926
Alphaproteobacteria
CAT
Met
>WENV183727798
PJTP01000447
164825
Alphaproteobacteria
GAT
Ile
>WENV183728144
PJTP01044631
145497
Alphaproteobacteria
GTG
His
>WENV183727501
PJTP01000007
25533
Alphaproteobacteria
GGA
Ser
>WENV183728150
PJTP01048345
237281
Alphaproteobacteria
CGT
Thr
>WENV183728028
PJTP01019423
411642
Alphaproteobacteria
GCA
Cys
>WENV183728062
PJTP01025901
23392
Alphaproteobacteria
GGA
Ser
>WENV183727985
PJTP01012571
148854
Alphaproteobacteria
GTC
Asp
>WENV183728030
PJTP01020027
338622
Alphaproteobacteria
GTT
Asn
>WENV183727455
PJTP01000002
338622
Alphaproteobacteria
GTT
Asn
>WENV183727512
PJTP01000009
10642
Alphaproteobacteria
GCT
Ser
>WENV183728067
PJTP01026979
144972
Alphaproteobacteria
>WENV183728127
PJTP01039992
237479
Alphaproteobacteria
TTT
Lys
>WENV183727466
PJTP01000003
339436
Alphaproteobacteria
>WENV183728021
PJTP01018027
412281
Alphaproteobacteria
CTG
Gln
>WENV183728184
PJTP01058151
267554
Alphaproteobacteria
TGC
Ala
>WENV183727860
PJTP01001479
267554
Alphaproteobacteria
TGC
Ala
>WENV183727826
PJTP01000821
267554
Alphaproteobacteria
TGC
Ala
>WENV183728085
PJTP01030222
98423
Alphaproteobacteria
CAA
Leu
>WENV183727456
PJTP01000002
101826
Alphaproteobacteria
TAG
Leu
>WENV183727716
PJTP01000098
146817
Alphaproteobacteria
GTG
His
>WENV183727722
PJTP01000098
237439
Alphaproteobacteria
CTT
Lys
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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