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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = TCA
HIT:
22 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.309 (2 seq.)
>W10500430
ADFP01000051
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
15794
15696
-
seC
TCA
[ENA]
¡û
>W1750076742
MUHX01000019
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
37966
38064
+
SeC
TCA
[ENA]
¡û
Identical group No.493 (1 seq.)
>W09200027
ABTR01000003
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
79190
79288
+
SeC
TCA
[ENA]
¡û
Identical group No.516 (1 seq.)
>W1720001237
FXBB01000001
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
41871
41969
+
SeC
TCA
[ENA]
¡û
Identical group No.718 (2 seq.)
>C122000014
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
761894
761991
+
SeC
TCA
[Ensembl]
¡û
>W1720001186
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
325867
325770
-
SeC
TCA
[ENA]
¡û
Identical group No.811 (3 seq.)
>WENV170676904
LDZS01003181
[LDZS] terrestrial metagenome; oil reservoir sample K3
22611
22708
+
SeC(p)
TCA
[ENA]
¢þ
>W1610613272
LGFQ01000001
Synergistota
Synergistales bacterium 54_24 [LGFQ]
22611
22708
+
SeC(p)
TCA
[ENA]
¡û
>W1710734479
LGFQ01000001
Synergistota
Synergistales bacterium 54_24 [LGFQ]
22611
22708
+
SeC(p)
TCA
[ENA]
¡û
Identical group No.966 (2 seq.)
>WENV180798014
ODJB01216990
[ODJB] human metagenome; G_DNA_Supragingival plaque
159
62
-
SeC
TCA
[ENA]
¢þ
>C162000127
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
196682
196779
+
SeC
TCA
-
¡û
Identical group No.1072 (2 seq.)
>W1711137570
LVBO01000403
Synergistota
Synergistales bacterium Syner_01 [LVBO]
102
5
-
SeC(p)
TCA
[ENA]
¡û
>W1610948690
LVBO01000403
Synergistota
Synergistales bacterium Syner_01 [LVBO]
102
5
-
SeC(p)
TCA
[ENA]
¡û
Identical group No.1187 (1 seq.)
>W131157313
AQRZ01000002
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
1782
1685
-
SeC
TCA
[ENA]
¡û
Identical group No.1235 (1 seq.)
>W1720001009
FNPD01000009
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
40101
40004
-
SeC
TCA
[ENA]
¡û
Identical group No.1363 (4 seq.)
>W1711137598
LVBP01000260
Synergistota
Synergistales bacterium Syner_02 [LVBP]
5817
5720
-
SeC(p)
TCA
[ENA]
¡û
>WENV170671554
LAHU01084842
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
345
248
-
SeC(p)
TCA
[ENA]
¢þ
>WENV170721193
LSQX01182305
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
21989
22086
+
SeC(p)
TCA
[ENA]
¢þ
>W1610948718
LVBP01000260
Synergistota
Synergistales bacterium Syner_02 [LVBP]
5817
5720
-
SeC(p)
TCA
[ENA]
¡û
Identical group No.1369 (1 seq.)
>W09200060
ACJX01000261
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
819
916
+
SeC
TCA
[ENA]
¡û
Identical group No.1556 (1 seq.)
>W141278977
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
889890
889793
-
SeC
TCA
[ENA]
¡û
Identical group No.1751 (8 seq.)
>WENV170678629
LDZU01003435
[LDZU] terrestrial metagenome; oil reservoir sample SB2
7727
7631
-
SeC
TCA
[ENA]
¢þ
>WENV170967222
MTKW01000525
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
75753
75849
+
SeC
TCA
[ENA]
¢þ
>WENV170971698
MTKX01009951
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
47481
47385
-
SeC
TCA
[ENA]
¢þ
>WENV170973930
MTKY01051874
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2831
2927
+
SeC
TCA
[ENA]
¢þ
>WENV170974070
MTKY01053605
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1475
1571
+
SeC
TCA
[ENA]
¢þ
>WENV170975868
MTKZ01002879
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
134703
134799
+
SeC
TCA
[ENA]
¢þ
>W1610614167
LGGV01000060
Synergistota
Synergistales bacterium 58_81 [LGGV]
7727
7631
-
SeC
TCA
[ENA]
¡û
>W1710735250
LGGV01000060
Synergistota
Synergistales bacterium 58_81 [LGGV]
7727
7631
-
SeC
TCA
[ENA]
¡û
Identical group No.1831 (7 seq.)
>C171050557
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
2128474
2128378
-
SeC(p)
TCA
-
¡û
>WENV181914733
OGYF01000915
[OGYF] human gut metagenome; faeces
26529
26433
-
SeC
TCA
[ENA]
¢þ
>WENV181980672
OHAF01096981
[OHAF] human gut metagenome; faeces
269
365
+
SeC
TCA
[ENA]
¢þ
>WENV182031354
OHCS01011861
[OHCS] human gut metagenome; feces
616
520
-
SeC
TCA
[ENA]
¢þ
>WENV182180791
OHNO01013665
[OHNO] human gut metagenome; feces
1069
1165
+
SeC
TCA
[ENA]
¢þ
>WENV182212904
OHQG01015208
[OHQG] human gut metagenome; feces
453
357
-
SeC
TCA
[ENA]
¢þ
>WENV182216015
OHQM01011977
[OHQM] human gut metagenome; feces
584
488
-
SeC
TCA
[ENA]
¢þ
Identical group No.1929 (1 seq.)
>W1712039373
NFJQ01000008
Synergistota
Cloacibacillus sp. An23 [NFJQ]
180129
180225
+
SeC(p)
TCA
[ENA]
¡û
Identical group No.1945 (6 seq.)
>W145031065
JMKI01000037
Synergistota
Synergistes jonesii [JMKI]
128875
128779
-
seC
TCA
[ENA]
¡û
>W1750018924
JPZQ01000048
Synergistota
Synergistes jonesii [JPZQ]
29644
29548
-
SeC
TCA
[ENA]
¡û
>W1750018927
JPZR01000038
Synergistota
Synergistes jonesii [JPZR]
29652
29556
-
SeC
TCA
[ENA]
¡û
>W1750018930
JPZS01000041
Synergistota
Synergistes jonesii [JPZS]
29655
29559
-
SeC
TCA
[ENA]
¡û
>W1750018945
JQEK01000051
Synergistota
Synergistes jonesii [JQEK]
769
673
-
SeC
TCA
[ENA]
¡û
>W1750018948
JQEL01000043
Synergistota
Synergistes jonesii [JQEL]
29649
29553
-
SeC
TCA
[ENA]
¡û
Identical group No.2121 (8 seq.)
>WENV181908602
OGYB01000151
[OGYB] human gut metagenome; faeces
43729
43825
+
SeC
TCA
[ENA]
¢þ
>WENV182143878
OHKV01043360
[OHKV] human gut metagenome; feces
262
166
-
SeC
TCA
[ENA]
¢þ
>WENV182172733
OHMY01042235
[OHMY] human gut metagenome; feces
463
559
+
SeC
TCA
[ENA]
¢þ
>WENV182274967
OHUK01037060
[OHUK] human gut metagenome; feces
530
626
+
SeC
TCA
[ENA]
¢þ
>WENV182537603
OIXH01011093
[OIXH] human gut metagenome; faeces
4937
5033
+
SeC
TCA
[ENA]
¢þ
>WENV183039756
OLGB01014880
[OLGB] human gut metagenome; faeces
867
771
-
SeC
TCA
[ENA]
¢þ
>W141452038
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
764986
764890
-
SeC(p)
TCA
[ENA]
¡û
>W121000503
ACUH01000052
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
21854
21758
-
SeC
TCA
[ENA]
¡û
Identical group No.2333 (1 seq.)
>W11138605
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
42840
42936
+
SeC
TCA
[ENA]
¡û
Identical group No.2550 (5 seq.)
>WENV170677152
LDZT01003260
[LDZT] terrestrial metagenome; oil reservoir sample SB1
3499
3595
+
SeC
TCA
[ENA]
¢þ
>W1610613613
LGGB01000012
Synergistota
Synergistales bacterium 53_16 [LGGB]
3499
3595
+
SeC
TCA
[ENA]
¡û
>W1620001124
LGHG01000012
Synergistota
Synergistales bacterium 54_9 [LGHG]
48
144
+
SeC
TCA
[ENA]
¡û
>W1720001532
LGHG01000012
Synergistota
Synergistales bacterium 54_9 [LGHG]
48
144
+
SeC
TCA
[ENA]
¡û
>W1710734785
LGGB01000012
Synergistota
Synergistales bacterium 53_16 [LGGB]
3499
3595
+
SeC
TCA
[ENA]
¡û
Identical group No.3213 (1 seq.)
>C122000008
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
944919
945015
+
SeC
TCA
[Ensembl]
¡û
Identical group No.5244 (1 seq.)
>W121031626
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
826313
826408
+
SeC
TCA
[ENA]
¡û
Identical group No.7799 (3 seq.)
>WENV181409358
OGCI01000124
[OGCI] hot springs metagenome; Hot spring water
56531
56437
-
SeC
TCA
[ENA]
¢þ
>W09110154
ABUW01000007
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
38725
38819
+
SeC
TCA
[ENA]
¡û
>C10113014
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
1063771
1063677
-
SeC
TCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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