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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
Anticodon = TGA
HIT:
27 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.6479 (1 seq.)
>SRA1003064
SRR002326.178258
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
148
241
+
Ser
TGA
[SRA]
Identical group No.15224 (1 seq.)
>SRA1002852
SRR002326.59338
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
241
150
-
Ser
TGA
[SRA]
Identical group No.17861 (1 seq.)
>SRA1004084
SRR002328.137604
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
125
216
+
Ser
TGA
[SRA]
Identical group No.26583 (1 seq.)
>SRA1003888
SRR002328.11111
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
56
146
+
Ser
TGA
[SRA]
Identical group No.29653 (109 seq.)
>W1710854937
LLXX01000090
Alphaproteobacteria
Bradyrhizobium valentinum [LLXX]
158365
158454
+
Ser
TGA
[ENA]
¡û
>W1710854985
LLXY01000146
Alphaproteobacteria
Bradyrhizobium valentinum [LLXY]
1386
1297
-
Ser
TGA
[ENA]
¡û
>W1710855013
LLXZ01000012
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
85402
85491
+
Ser
TGA
[ENA]
¡û
>W1710855151
LLYB01000072
Alphaproteobacteria
Bradyrhizobium lablabi [LLYB]
24590
24501
-
Ser
TGA
[ENA]
¡û
>W1710861426
LMDP01000001
Alphaproteobacteria
Afipia sp. Root123D2 [LMDP]
1433508
1433419
-
Ser
TGA
[ENA]
¡û
>W1710877741
LMQJ01000011
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
3252
3163
-
Ser
TGA
[ENA]
¡û
>W1710892760
LNEC01000010
Alphaproteobacteria
Bradyrhizobiaceae bacterium Ga0074131 [LNEC]
222133
222044
-
Ser
TGA
[ENA]
¡û
>W1711073438
LSIN01000293
Alphaproteobacteria
Bradyrhizobium sp. CCH10-C7 [LSIN]
13659
13748
+
Ser
TGA
[ENA]
¡û
>W1711129612
LUUB01000079
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
501193
501104
-
Ser
TGA
[ENA]
¡û
>W1711138870
LVEM01000001
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
1358679
1358590
-
Ser
TGA
[ENA]
¡û
>W1711317194
MAXB01000114
Alphaproteobacteria
Bradyrhizobium paxllaeri [MAXB]
53905
53816
-
Ser
TGA
[ENA]
¡û
>W1711317207
MAXC01000009
Alphaproteobacteria
Bradyrhizobium sp. LMTR 3 [MAXC]
96848
96759
-
Ser
TGA
[ENA]
¡û
>W1711501376
MKRN01000197
Alphaproteobacteria
Nitrobacter sp. 62-13 [MKRN]
65374
65463
+
Ser
TGA
[ENA]
¡û
>W1711505878
MKVX01000018
Alphaproteobacteria
Rhizobiales bacterium 62-47 [MKVX]
812859
812948
+
Ser
TGA
[ENA]
¡û
>W1711636738
MPVQ01000052
Alphaproteobacteria
Bradyrhizobium brasilense UFLA 03-321 [MPVQ]
100283
100372
+
Ser
TGA
[ENA]
¡û
>W1711928915
NAFK01000173
Alphaproteobacteria
Bradyrhizobium canariense [NAFK]
21053
21142
+
Ser
TGA
[ENA]
¡û
>W1711928952
NAFL01000253
Alphaproteobacteria
Bradyrhizobium japonicum [NAFL]
56499
56588
+
Ser
TGA
[ENA]
¡û
>W1712049601
NFUH01000141
Alphaproteobacteria
Bradyrhizobium guangdongense [NFUH]
8076
7987
-
Ser
TGA
[ENA]
¡û
>C171021104
CP013127
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [CP013127]
5073778
5073867
+
Ser
TGA
-
¡û
>W131164977
ARBF01000067
Alphaproteobacteria
Bradyrhizobium sp. WSM2793 WSM2793 [ARBF]
190892
190981
+
Ser
TGA
[ENA]
¡û
>W131226915
AUES01000047
Alphaproteobacteria
Bradyrhizobium sp. URHA0002 [AUES]
2362
2273
-
Ser
TGA
[ENA]
¡û
>W131227190
AUEZ01000003
Alphaproteobacteria
Bradyrhizobium sp. Ai1a-2 [AUEZ]
210192
210281
+
Ser
TGA
[ENA]
¡û
>C003078
BA000040
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 USDA110 [BA000040]
5014774
5014685
-
Ser
TGA
[Ensembl]
¡û
>C019047
CP000250
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [CP000250]
3470486
3470575
+
Ser
TGA
[Ensembl]
¡û
>W141001295
ADOU01000069
Alphaproteobacteria
Bradyrhizobium diazoefficiens SEMIA 5080 [ADOU]
169478
169389
-
Ser
TGA
[ENA]
¡û
>WENV180044315
MAVJ01000441
[MAVJ] viral metagenome; RNA from tracheal sample collected at farm Nasib, Godhra
324
235
-
Ser
TGA
[ENA]
¢þ
>W141007481
AGWY01000005
Alphaproteobacteria
Afipia clevelandensis ATCC 49720 [AGWY]
26581
26492
-
Ser
TGA
[ENA]
¡û
>WENV180264668
OBEQ011591436
[OBEQ] groundwater metagenome; groundwater
4
93
+
Ser
TGA
[ENA]
¢þ
>WENV180304029
OBJH01003172
[OBJH] soil metagenome; soil
492
581
+
Ser
TGA
[ENA]
¢þ
>WENV180308554
OBJR01043121
[OBJR] soil metagenome; soil
124
35
-
Ser
TGA
[ENA]
¢þ
>WENV180331546
OBLA01130954
[OBLA] soil metagenome; Alaskan Permafrost
68
155
+
Ser
TGA
[ENA]
¢þ
>WENV180344856
OBLL01273557
[OBLL] soil metagenome; soil
185
96
-
Ser
TGA
[ENA]
¢þ
>WENV180364160
OBNZ01112764
[OBNZ] marine metagenome; ENVO:00002010
180
91
-
Ser
TGA
[ENA]
¢þ
>W141041862
AMCQ01001538
Alphaproteobacteria
Bradyrhizobium sp. CCGE-LA001 [AMCQ]
1417
1328
-
Ser
TGA
[ENA]
¡û
>w001309
AAAF01000014
Alphaproteobacteria
Rhodopseudomonas palustris [AAAF]
791588
791679
+
Ser
TGA
[ENA]
¡û
>W141063705
APJE01000009
Alphaproteobacteria
Afipia sp. OHSU_I-C6 [APJE]
336604
336693
+
Ser
TGA
[ENA]
¡û
>WENV181165239
OEIR01681689
[OEIR] soil metagenome; soil
67
156
+
Ser
TGA
[ENA]
¢þ
>WENV181165697
OEIS01113082
[OEIS] soil metagenome; soil
128
39
-
Ser
TGA
[ENA]
¢þ
>WENV181167029
OEIU01006702
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1343
1254
-
Ser
TGA
[ENA]
¢þ
>WENV181167426
OEIU01028029
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
91
2
-
Ser
TGA
[ENA]
¢þ
>WENV181168239
OEIU01221423
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
91
2
-
Ser
TGA
[ENA]
¢þ
>WENV181168844
OEIU01837073
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
76
165
+
Ser
TGA
[ENA]
¢þ
>WENV181372223
OFQW01031069
[OFQW] wastewater metagenome; Exp Tend NO 90WW
342
431
+
Ser
TGA
[ENA]
¢þ
>WENV181374774
OFQY01020570
[OFQY] wastewater metagenome; Exp Tend VB 10WW
549
460
-
Ser
AGA
[ENA]
¢þ
>W141151083
AXAU01000001
Alphaproteobacteria
Bradyrhizobium murdochi WSM1741 [AXAU]
693640
693551
-
Ser
TGA
[ENA]
¡û
>W141151241
AXAX01000011
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [AXAX]
112189
112278
+
Ser
TGA
[ENA]
¡û
>W141214008
AZSJ01000007
Alphaproteobacteria
Afipia sp. P52-10 [AZSJ]
569880
569791
-
Ser
TGA
[ENA]
¡û
>W141243596
CAJQ02000011
Alphaproteobacteria
Afipia birgiae 34632 [CAJQ]
199406
199495
+
Ser
TGA
[ENA]
¡û
>WENV183724784
PJQE01067218
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
160
71
-
Ser
TGA
[ENA]
¢þ
>WENV183726189
PJQF01106824
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
179
90
-
Ser
TGA
[ENA]
¢þ
>WENV183745358
PJUL01035537
[PJUL] feces metagenome; Chicken feces enriched on filter paper
86
-1
-
Ser
TGA
[ENA]
¢þ
>WENV170551709
CXWJ01018680
[CXWJ] wastewater metagenome; activated sludge
1242
1153
-
Ser
TGA
[ENA]
¢þ
>WENV170705632
LNAP01000036
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
5030
5119
+
Ser
TGA
[ENA]
¢þ
>WENV170709769
LNFM01000681
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
12729
12640
-
Ser
TGA
[ENA]
¢þ
>WENV170709803
LNFM01000734
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
24393
24482
+
Ser
TGA
[ENA]
¢þ
>WENV170711030
LNFM01003322
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
31632
31721
+
Ser
TGA
[ENA]
¢þ
>WENV170711456
LNFM01005328
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
30544
30455
-
Ser
TGA
[ENA]
¢þ
>WENV170961905
MLJW01005660
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
156
245
+
Ser
TGA
[ENA]
¢þ
>WENV170998659
MWWJ01071855
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
429
340
-
Ser
TGA
[ENA]
¢þ
>C181041881
CP019966
Alphaproteobacteria
Rhodopseudomonas palustris PS3 [CP019966]
2631584
2631495
-
Ser
TGA
-
¡û
>C181181581
CP029603
Alphaproteobacteria
Bradyrhizobium diazoefficiens XF7 [CP029603]
5236670
5236581
-
Ser
TGA
-
¡û
>C191071721
CP030053
Alphaproteobacteria
Bradyrhizobium guangzhouense CCBAU 51670 [CP030053]
3699266
3699355
+
Ser
TGA
-
¡û
>C191092048
CP032617
Alphaproteobacteria
Bradyrhizobium diazoefficiens 110spc4 [CP032617]
4950418
4950329
-
Ser
TGA
-
¡û
>W09104381
AALQ01000003
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [AALQ]
78084
77995
-
Ser
TGA
[ENA]
¡û
>W141730470
JNIJ01000013
Alphaproteobacteria
Bradyrhizobium sp. URHD0069 [JNIJ]
148284
148195
-
Ser
TGA
[ENA]
¡û
>W1911409814
NWTE01000057
Alphaproteobacteria
Bradyrhizobium diazoefficiens Y21 [NWTE]
8258
8169
-
Ser
TGA
[ENA]
¡û
>W1911410011
NWTI01000015
Alphaproteobacteria
Bradyrhizobium sp. Y36 [NWTI]
20703
20614
-
Ser
TGA
[ENA]
¡û
>W1911629526
PSRR01000491
Alphaproteobacteria
Bradyrhizobium sp. Leo170 [PSRR]
1736
1825
+
Ser
TGA
[ENA]
¡û
>W1810089291
PGEQ01000001
Alphaproteobacteria
Bradyrhizobium lablabi GAS165 [PGEQ]
3032846
3032757
-
Ser
TGA
[ENA]
¡û
>W1810089621
PGEV01000001
Alphaproteobacteria
Afipia broomeae GAS525 [PGEV]
1839620
1839709
+
Ser
TGA
[ENA]
¡û
>SRA1002845
SRR002326.55311
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
104
15
-
Ser
TGA
[SRA]
>W1810395547
PYCM01000583
Alphaproteobacteria
Bradyrhizobium algeriense RST89 [PYCM]
61553
61642
+
Ser
TGA
[ENA]
¡û
>W1810395621
PYCN01000015
Alphaproteobacteria
Bradyrhizobium algeriense RST91 [PYCN]
227
138
-
Ser
TGA
[ENA]
¡û
>W1810787526
QRDT01000030
Alphaproteobacteria
Rhodopseudomonas pentothenatexigens JA575 [QRDT]
29878
29789
-
Ser
TGA
[ENA]
¡û
>W1810884423
QUMP01000030
Alphaproteobacteria
Rhodopseudomonas thermotolerans JA576,NBRC 108863,KCTC 15144 [QUMP]
29878
29789
-
Ser
TGA
[ENA]
¡û
>C151066557
CP010313
Alphaproteobacteria
Bradyrhizobium japonicum E109 [CP010313]
5314904
5314815
-
Ser
TGA
[Ensembl]
¡û
>W10112821
ADFI01000010
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
63464
63375
-
Ser
TGA
[ENA]
¡û
>W1510973720
JGCL01000004
Alphaproteobacteria
Bradyrhizobium japonicum FN1 [JGCL]
48066
47977
-
Ser
TGA
[ENA]
¡û
>W11116048
ADFI01000010
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
63464
63375
-
Ser
TGA
[ENA]
¡û
>C11118759
CP002418
Alphaproteobacteria
Rhodopseudomonas palustris [CP002418]
3310829
3310918
+
Ser
TGA
[Ensembl]
¡û
>W1511533255
JYMR01000008
Alphaproteobacteria
Bradyrhizobium sp. LTSP849 [JYMR]
60490
60579
+
Ser
TGA
[ENA]
¡û
>W1511533328
JYMS01000046
Alphaproteobacteria
Bradyrhizobium sp. LTSP857 [JYMS]
219033
218946
-
Ser
TGA
[ENA]
¡û
>W1511625953
LCZM01000245
Alphaproteobacteria
Rhodopseudomonas palustris 42OL [LCZM]
3242
3331
+
Ser
TGA
[ENA]
¡û
>W1511681476
LFIQ01000086
Alphaproteobacteria
Bradyrhizobium pachyrhizi PAC 48 [LFIQ]
5074
4985
-
Ser
TGA
[ENA]
¡û
>W1511705986
LGTB01000004
Alphaproteobacteria
Bradyrhizobium viridifuturi SEMIA 690 [LGTB]
268455
268544
+
Ser
TGA
[ENA]
¡û
>W1511706689
LGUJ01000008
Alphaproteobacteria
Bradyrhizobium diazoefficiens Is-1 [LGUJ]
169490
169401
-
Ser
TGA
[ENA]
¡û
>C161001034
AP014685
Alphaproteobacteria
Bradyrhizobium diazoefficiens NK6 [AP014685]
8926570
8926659
+
Ser
TGA
-
¡û
>C161034256
CP011360
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 [CP011360]
4334445
4334356
-
Ser
TGA
-
¡û
>C161097215
CP016428
Alphaproteobacteria
Bradyrhizobium icense LMTR 13 [CP016428]
4300663
4300574
-
Ser
TGA
[Ensembl]
¡û
>W121065431
AJQA01000120
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 25435 [AJQA]
7945
8034
+
Ser
TGA
[ENA]
¡û
>W121065841
AJQI01000445
Alphaproteobacteria
Bradyrhizobium diazoefficiens CCBAU 41267 [AJQI]
7961
8050
+
Ser
TGA
[ENA]
¡û
>C131000835
AP012603
Alphaproteobacteria
Bradyrhizobium oligotrophicum S58 [AP012603]
4389585
4389496
-
Ser
TGA
[Ensembl]
¡û
>W1610717278
LLXX01000090
Alphaproteobacteria
Bradyrhizobium valentinum [LLXX]
158365
158454
+
Ser
TGA
[ENA]
¡û
>W1610717326
LLXY01000146
Alphaproteobacteria
Bradyrhizobium valentinum [LLXY]
1386
1297
-
Ser
TGA
[ENA]
¡û
>W1610717354
LLXZ01000012
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
85402
85491
+
Ser
TGA
[ENA]
¡û
>W1610717492
LLYB01000072
Alphaproteobacteria
Bradyrhizobium lablabi [LLYB]
24590
24501
-
Ser
TGA
[ENA]
¡û
>W1610723772
LMDP01000001
Alphaproteobacteria
Afipia sp. Root123D2 [LMDP]
1433508
1433419
-
Ser
TGA
[ENA]
¡û
>W1610740087
LMQJ01000011
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
3252
3163
-
Ser
TGA
[ENA]
¡û
>W1610753026
LNEC01000010
Alphaproteobacteria
Bradyrhizobiaceae bacterium Ga0074131 [LNEC]
222133
222044
-
Ser
TGA
[ENA]
¡û
>W1610912743
LSIN01000293
Alphaproteobacteria
Bradyrhizobium sp. CCH10-C7 [LSIN]
13659
13748
+
Ser
TGA
[ENA]
¡û
>W1610940685
LUUB01000079
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
501193
501104
-
Ser
TGA
[ENA]
¡û
>W1610949878
LVEM01000001
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
1358679
1358590
-
Ser
TGA
[ENA]
¡û
>W1611061264
MAXB01000114
Alphaproteobacteria
Bradyrhizobium paxllaeri [MAXB]
53905
53816
-
Ser
TGA
[ENA]
¡û
>W1611061277
MAXC01000009
Alphaproteobacteria
Bradyrhizobium sp. LMTR 3 [MAXC]
96848
96759
-
Ser
TGA
[ENA]
¡û
>W1710513057
FMZW01000020
Alphaproteobacteria
Bradyrhizobium brasilense R5 [FMZW]
42488
42577
+
Ser
TGA
[ENA]
¡û
>W1710536635
FNTI01000001
Alphaproteobacteria
Bradyrhizobium lablabi [FNTI]
7619799
7619888
+
Ser
TGA
[ENA]
¡û
>W1710564449
FOQM01000036
Alphaproteobacteria
Bradyrhizobium sp. Gha [FOQM]
56974
57063
+
Ser
TGA
[ENA]
¡û
>W1710594262
FSRD01000001
Alphaproteobacteria
Bradyrhizobium erythrophlei [FSRD]
7517358
7517269
-
Ser
TGA
[ENA]
¡û
>W1710735651
LGHL01000119
Alphaproteobacteria
Bradyrhizobium sp. NAS80.1 [LGHL]
7552
7463
-
Ser
TGA
[ENA]
¡û
Identical group No.29663 (69 seq.)
>W1710864959
LMGH01000010
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
427331
427242
-
Ser
TGA
[ENA]
¡û
>W1710865779
LMGY01000008
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
76538
76627
+
Ser
TGA
[ENA]
¡û
>W1710865900
LMHA01000003
Gammaproteobacteria
Pseudoxanthomonas sp. Root65 [LMHA]
465728
465817
+
Ser
TGA
[ENA]
¡û
>W1710866716
LMHR01000088
Gammaproteobacteria
Rhodanobacter sp. Root179 [LMHR]
428893
428982
+
Ser
TGA
[ENA]
¡û
>W1710880616
LMSL01000036
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
59794
59705
-
Ser
TGA
[ENA]
¡û
>W1711073099
LSIF01000101
Gammaproteobacteria
Pseudoxanthomonas mexicana [LSIF]
744
655
-
Ser
TGA
[ENA]
¡û
>W1711147551
LVJS01000106
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
19
108
+
Ser
TGA
[ENA]
¡û
>W1711421698
MHZQ01000247
Gammaproteobacteria
Rhodanobacter sp. RIFOXYA1_FULL_67_6 [MHZQ]
2128
2217
+
Ser
TGA
[ENA]
¡û
>W131046186
AMSF01000016
Gammaproteobacteria
Dyella ginsengisoli LA-4 [AMSF]
84636
84547
-
Ser
TGA
[ENA]
¡û
>W1711751277
MUNP01000070
Gammaproteobacteria
Rhodanobacter sp. C06 [MUNP]
1092
1003
-
Ser
TGA
[ENA]
¡û
>W1711751314
MUNQ01000016
Gammaproteobacteria
Rhodanobacter sp. C05 [MUNQ]
129078
128989
-
Ser
TGA
[ENA]
¡û
>W1711751485
MUNU01000014
Gammaproteobacteria
Rhodanobacter sp. B05 [MUNU]
208838
208749
-
Ser
TGA
[ENA]
¡û
>W1711751519
MUNV01000008
Gammaproteobacteria
Rhodanobacter sp. B04 [MUNV]
81515
81604
+
Ser
TGA
[ENA]
¡û
>WENV180017886
FSXU01000040
[FSXU] metagenome; soil
2083
2172
+
Ser
TGA
[ENA]
¢þ
>WENV180099581
NMRC01019340
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
3730
3819
+
Ser
TGA
[ENA]
¢þ
>WENV181308090
OFIS01000202
[OFIS] sludge metagenome; sludge
18372
18461
+
Ser
TGA
[ENA]
¢þ
>WENV181401388
OFTX01000088
[OFTX] sludge metagenome; sludge
38717
38628
-
Ser
TGA
[ENA]
¢þ
>WENV181402187
OFTY01000208
[OFTY] sludge metagenome; sludge
38709
38620
-
Ser
TGA
[ENA]
¢þ
>W141170529
AXYI01000011
Gammaproteobacteria
Xanthomonadaceae bacterium JGI 0001020-F16 [AXYI]
33750
33839
+
Ser
TGA
[ENA]
¡û
>WENV183698076
OUNK011131735
[OUNK] metagenome; soil
7572
7483
-
Ser
TGA
[ENA]
¢þ
>WENV170705818
LNAP01000391
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
27318
27229
-
Ser
TGA
[ENA]
¢þ
>C191138598
CP035300
Gammaproteobacteria
Dyella sp. M7H15-1 [CP035300]
3220916
3221005
+
Ser
TGA
-
¡û
>C191186036
CP041046
Gammaproteobacteria
Luteibacter pinisoli MAH-14 [CP041046]
2680620
2680531
-
Ser
TGA
-
¡û
>W141821291
JQNL01000001
Gammaproteobacteria
Luteibacter sp. 9143a 9143 [JQNL]
343949
343860
-
Ser
TGA
[ENA]
¡û
>W1911199828
NRDP01000040
Gammaproteobacteria
Dyella sp. AD56 [NRDP]
17363
17452
+
Ser
TGA
[ENA]
¡û
>SRA1003339
SRR002326.400847
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
133
44
-
Ser
TGA
[SRA]
>W1810195891
PKSO01000002
Gammaproteobacteria
Pseudoxanthomonas sp. KAs_5_3 [PKSO]
1253404
1253315
-
Ser
TGA
[ENA]
¡û
>W1810477557
QAOX01000002
Gammaproteobacteria
Luteibacter sp. OK325 [QAOX]
790984
790895
-
Ser
TGA
[ENA]
¡û
>W1810485607
QAVX01000040
Gammaproteobacteria
Dyella sp. C11 [QAVX]
1918
2007
+
Ser
TGA
[ENA]
¡û
>W1810628330
QICJ01000001
Gammaproteobacteria
Dyella sp. AtDHG13 [QICJ]
51925
51836
-
Ser
TGA
[ENA]
¡û
>W1810629439
QIRF01000019
Gammaproteobacteria
Dyella sp. C9 [QIRF]
11765
11676
-
Ser
TGA
[ENA]
¡û
>W1810785117
QRBE01000029
Gammaproteobacteria
Dyella monticola 4G-K06 [QRBE]
60
149
+
Ser
TGA
[ENA]
¡û
>W1810785138
QRBF01000001
Gammaproteobacteria
Dyella psychrodurans 4MSK11 [QRBF]
827142
827053
-
Ser
TGA
[ENA]
¡û
>C151023755
CP007444
Gammaproteobacteria
Dyella jiangningensis SBZ3-12 [CP007444]
2234824
2234735
-
Ser
TGA
[Ensembl]
¡û
>C151039112
CP008884
Gammaproteobacteria
Dyella japonica A8 [CP008884]
3295020
3294931
-
Ser
TGA
[Ensembl]
¡û
>W1511305062
JPLA01000024
Gammaproteobacteria
Dyella japonica DSM 16301 [JPLA]
98361
98450
+
Ser
TGA
[ENA]
¡û
>W1511305105
JPLB01000029
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 [JPLB]
5171
5260
+
Ser
TGA
[ENA]
¡û
>W1511305251
JPLD01000156
Gammaproteobacteria
Xanthomonas hyacinthi DSM 19077 [JPLD]
11998
11909
-
Ser
TGA
[ENA]
¡û
>W1511433921
JUHO01000001
Gammaproteobacteria
Luteibacter sp. 9133 [JUHO]
2413450
2413361
-
Ser
TGA
[ENA]
¡û
>W1511547585
JZRB01000025
Gammaproteobacteria
Luteibacter yeojuensis SU11 [JZRB]
119335
119246
-
Ser
TGA
[ENA]
¡û
>W1511686267
LFQR01000007
Gammaproteobacteria
Frateuria defendens Hyalesthes Obsoletus HyOG [LFQR]
57994
58083
+
Ser
TGA
[ENA]
¡û
>C121011584
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
2409185
2409096
-
Ser
TGA
[Ensembl]
¡û
>W121017556
AGRV01000013
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
291424
291513
+
Ser
TGA
[ENA]
¡û
>W121071271
AJXU01000003
Gammaproteobacteria
Rhodanobacter fulvus Jip2 [AJXU]
10064
10153
+
Ser
TGA
[ENA]
¡û
>W121071410
AJXW01000122
Gammaproteobacteria
Rhodanobacter thiooxydans LCS2 [AJXW]
3605
3694
+
Ser
TGA
[ENA]
¡û
>W121113916
ALOY01000184
Gammaproteobacteria
Dyella japonica A8 [ALOY]
2027
2116
+
Ser
TGA
[ENA]
¡û
>W1610616791
LGRQ01000293
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
4233
4322
+
Ser
TGA
[ENA]
¡û
>W1610727305
LMGH01000010
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
427331
427242
-
Ser
TGA
[ENA]
¡û
>W1610728125
LMGY01000008
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
76538
76627
+
Ser
TGA
[ENA]
¡û
>W1610728246
LMHA01000003
Gammaproteobacteria
Pseudoxanthomonas sp. Root65 [LMHA]
465728
465817
+
Ser
TGA
[ENA]
¡û
>W1610729062
LMHR01000088
Gammaproteobacteria
Rhodanobacter sp. Root179 [LMHR]
428893
428982
+
Ser
TGA
[ENA]
¡û
>W1610742962
LMSL01000036
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
59794
59705
-
Ser
TGA
[ENA]
¡û
>W1610912404
LSIF01000101
Gammaproteobacteria
Pseudoxanthomonas mexicana [LSIF]
744
655
-
Ser
TGA
[ENA]
¡û
>W1610958504
LVJS01000106
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
19
108
+
Ser
TGA
[ENA]
¡û
>ENV000953
AY212800
Environmental sample from ENV division of INSDC
37218
37309
+
Ser
TGA
[ENA]
>W1710515264
FNBR01000001
Gammaproteobacteria
Dyella sp. 333MFSha [FNBR]
863118
863207
+
Ser
TGA
[ENA]
¡û
>W1710519808
FNFA01000004
Gammaproteobacteria
Dyella jiangningensis [FNFA]
361350
361439
+
Ser
TGA
[ENA]
¡û
>W1710527420
FNKZ01000003
Gammaproteobacteria
Pseudoxanthomonas sp. CF385 [FNKZ]
117062
116973
-
Ser
TGA
[ENA]
¡û
>W1710544588
FOAX01000002
Gammaproteobacteria
Pseudoxanthomonas sp. GM95 [FOAX]
1443726
1443815
+
Ser
TGA
[ENA]
¡û
>W1710545813
FOBU01000002
Gammaproteobacteria
Luteibacter sp. UNCMF331Sha3.1 [FOBU]
1159547
1159636
+
Ser
TGA
[ENA]
¡û
>W1710548718
FODZ01000004
Gammaproteobacteria
Luteibacter sp. UNC138MFCol5.1 [FODZ]
11333
11422
+
Ser
TGA
[ENA]
¡û
>W1710555185
FOJE01000001
Gammaproteobacteria
Luteibacter sp. 329MFSha [FOJE]
846237
846326
+
Ser
TGA
[ENA]
¡û
>W1710567349
FOSR01000007
Gammaproteobacteria
Rhodanobacter glycinis [FOSR]
35
124
+
Ser
TGA
[ENA]
¡û
>W1710575660
FOZI01000003
Gammaproteobacteria
Dyella sp. OK004 [FOZI]
24279
24368
+
Ser
TGA
[ENA]
¡û
>W1710579383
FPCI01000001
Gammaproteobacteria
Pseudoxanthomonas sp. YR558 [FPCI]
217328
217417
+
Ser
TGA
[ENA]
¡û
>W1710579664
FPIS01000001
Gammaproteobacteria
Luteibacter sp. UNCMF366Tsu5.1 [FPIS]
844367
844278
-
Ser
TGA
[ENA]
¡û
>W1710603040
FUYT01000001
Gammaproteobacteria
Luteibacter sp. 22Crub2.1 [FUYT]
341622
341533
-
Ser
TGA
[ENA]
¡û
>W1710604297
FUZV01000002
Gammaproteobacteria
Pseudoxanthomonas indica [FUZV]
1377346
1377435
+
Ser
TGA
[ENA]
¡û
>W1710742130
LGRQ01000293
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
4233
4322
+
Ser
TGA
[ENA]
¡û
Identical group No.32551 (4 seq.)
>W1710892466
LNDT01000037
Bdellovibrionota
Bdellovibrionales bacterium Ga0074137 [LNDT]
164181
164270
+
Ser
TGA
[ENA]
¡û
>WENV170709133
LNFM01000133
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
151051
151140
+
Ser
TGA
[ENA]
¢þ
>SRA1003322
SRR002326.388837
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
157
68
-
Ser
TGA
[SRA]
>W1610752732
LNDT01000037
Bdellovibrionota
Bdellovibrionales bacterium Ga0074137 [LNDT]
164181
164270
+
Ser
TGA
[ENA]
¡û
Identical group No.33179 (12 seq.)
>WENV180021125
FTDU01001059
[FTDU] metagenome; soil
1849
1938
+
Ser
TGA
[ENA]
¢þ
>WENV180021602
FTEU01000622
[FTEU] metagenome; soil
3841
3930
+
Ser
TGA
[ENA]
¢þ
>WENV180022101
FTFP01000119
[FTFP] metagenome; soil
281
370
+
Ser
TGA
[ENA]
¢þ
>WENV180022111
FTFP01000537
[FTFP] metagenome; soil
2383
2294
-
Ser
TGA
[ENA]
¢þ
>WENV180023088
FTHI01001120
[FTHI] metagenome; soil
5431
5342
-
Ser
TGA
[ENA]
¢þ
>WENV180023198
FTHP01000903
[FTHP] metagenome; soil
9323
9412
+
Ser
TGA
[ENA]
¢þ
>WENV180023285
FTHT01001721
[FTHT] metagenome; soil
1946
1857
-
Ser
TGA
[ENA]
¢þ
>WENV180028481
FTJB01012590
[FTJB] metagenome; soil
178
89
-
Ser
TGA
[ENA]
¢þ
>WENV180031240
FTJO01010562
[FTJO] metagenome; soil
889
978
+
Ser
TGA
[ENA]
¢þ
>WENV180031292
FTJO01012782
[FTJO] metagenome; soil
247
336
+
Ser
TGA
[ENA]
¢þ
>C191071842
CP030126
Alphaproteobacteria
Indioceanicola profundi SCSIO 08040 [CP030126]
1497026
1497115
+
Ser
TGA
-
¡û
>SRA1003096
SRR002326.196606
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
140
229
+
Ser
TGA
[SRA]
Identical group No.34290 (4 seq.)
>W1711386308
MEFD01000043
Betaproteobacteria
Rubrivivax sp. SCN 71-131 [MEFD]
98351
98262
-
Ser
TGA
[ENA]
¡û
>SRA1002014
SRR001308.184878
Metagenomic characterization of a wastewater treatment plant (SRP000180)
125
36
-
Ser
TGA
[SRA]
>SRA1003863
SRR002327.242368
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
216
127
-
Ser
TGA
[SRA]
>SRA1003879
SRR002328.3824
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
171
260
+
Ser
TGA
[SRA]
Identical group No.34295 (1 seq.)
>SRA1002830
SRR002326.44205
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
214
125
-
Ser
TGA
[SRA]
Identical group No.34300 (2 seq.)
>WENV180266572
OBEQ011767619
[OBEQ] groundwater metagenome; groundwater
334
423
+
Ser
TGA
[ENA]
¢þ
>SRA1003271
SRR002326.354467
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
110
21
-
Ser
TGA
[SRA]
Identical group No.34301 (2 seq.)
>W141730274
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
159854
159765
-
Ser
TGA
[ENA]
¡û
>SRA1003383
SRR002326.425703
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
92
3
-
Ser
TGA
[SRA]
Identical group No.34625 (6 seq.)
>WENV180038445
FZPV01000067
[FZPV] metagenome; underground water
5137
5226
+
Ser
TGA
[ENA]
¢þ
>WENV181388415
OFRM01015105
[OFRM] wastewater metagenome; Exp Tend VB 0WW
761
850
+
Ser
TGA
[ENA]
¢þ
>WENV181399582
OFSE01045611
[OFSE] wastewater metagenome; Exp Tend VB 50WW
6
95
+
Ser
TGA
[ENA]
¢þ
>W09134295
ACSD01000012
Betaproteobacteria
Gallionella capsiferriformans ES-2 [ACSD]
68599
68510
-
Ser
TGA
[ENA]
¡û
>SRA1003846
SRR002327.232542
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
161
72
-
Ser
TGA
[SRA]
>C10107118
CP002159
Betaproteobacteria
Gallionella capsiferriformans ES-2 [CP002159]
1993784
1993873
+
Ser
TGA
[Ensembl]
¡û
Identical group No.36039 (31 seq.)
>W1710867159
LMIB01000001
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
867012
867101
+
Ser
TGA
[ENA]
¡û
>W1710868117
LMIV01000001
Alphaproteobacteria
Sphingomonas sp. Root241 [LMIV]
1503154
1503065
-
Ser
TGA
[ENA]
¡û
>W1711353149
MDDS01000081
Alphaproteobacteria
Sphingomonas turrisvirgatae MCT13 [MDDS]
62388
62299
-
Ser
TGA
[ENA]
¡û
>W1711501465
MKRR01000111
Alphaproteobacteria
Sphingomonas sp. 66-10 [MKRR]
45490
45579
+
Ser
TGA
[ENA]
¡û
>C171030409
CP014168
Alphaproteobacteria
Sphingomonas panacis DCY99 [CP014168]
3373573
3373484
-
Ser
TGA
-
¡û
>C171095083
CP019511
Alphaproteobacteria
Sphingomonas sp. LM7 [CP019511]
985736
985647
-
Ser
TGA
-
¡û
>W131237441
AUOL01000183
Alphaproteobacteria
Sphingomonas sp. JGI 0001003-D23 [AUOL]
1264
1175
-
Ser
TGA
[ENA]
¡û
>WENV180020497
FTCZ01004884
[FTCZ] metagenome; soil
1673
1762
+
Ser
TGA
[ENA]
¢þ
>WENV180022433
FTGF01000331
[FTGF] metagenome; soil
657
746
+
Ser
TGA
[ENA]
¢þ
>WENV181402329
OFTY01000637
[OFTY] sludge metagenome; sludge
14005
14094
+
Ser
TGA
[ENA]
¢þ
>WENV170002837
AGTN01144116
[AGTN] bioreactor metagenome; poplar biomass
388
299
-
Ser
TGA
[ENA]
¢þ
>WENV170574205
FLYM01013498
[FLYM] hot springs metagenome; Sediment
1489
1400
-
Ser
TGA
[ENA]
¢þ
>W141452327
JFBW01000002
Alphaproteobacteria
Sphingomonas jaspsi DSM 18422 [JFBW]
1711329
1711240
-
Ser
TGA
[ENA]
¡û
>WENV170996309
MWWF01211698
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
250
161
-
Ser
TGA
[ENA]
¢þ
>C181081601
CP023449
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20 [CP023449]
2833731
2833820
+
Ser
TGA
-
¡û
>C181108655
CP024923
Alphaproteobacteria
Sphingomonas psychrotolerans Cra20 [CP024923]
1020902
1020813
-
Ser
TGA
-
¡û
>W141779840
JOOE01000001
Alphaproteobacteria
Sphingomonas sp. UNC305MFCol5.2 [JOOE]
246008
246097
+
Ser
TGA
[ENA]
¡û
>W1911398118
NWMW01000001
Alphaproteobacteria
Sphingomonas spermidinifaciens 9NM-10 [NWMW]
194463
194374
-
Ser
TGA
[ENA]
¡û
>W1911411145
NWUF01000008
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20m [NWUF]
133927
133838
-
Ser
TGA
[ENA]
¡û
>W1911783348
QXTF01000001
Alphaproteobacteria
Sphingomonas edaphi DAC4 [QXTF]
198498
198587
+
Ser
TGA
[ENA]
¡û
>SRA1003859
SRR002327.238762
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
97
186
+
Ser
TGA
[SRA]
>W1810538531
QDFY01000001
Alphaproteobacteria
Sphingosinicella terrae KCTC 52780 [QDFY]
662797
662708
-
Ser
TGA
[ENA]
¡û
>W1511581096
LARW01000050
Alphaproteobacteria
Sphingomonas sp. SRS2 [LARW]
28595
28506
-
Ser
TGA
[ENA]
¡û
>W11179055
AGFU01000014
Alphaproteobacteria
Sphingomonas elodea ATCC 31461 [AGFU]
65222
65311
+
Ser
TGA
[ENA]
¡û
>W1610071325
BCTZ01000004
Alphaproteobacteria
Sphingomonas soli NBRC 100801 [BCTZ]
89641
89552
-
Ser
TGA
[ENA]
¡û
>W1610076684
BCYY01000002
Alphaproteobacteria
Sphingomonas pituitosa NBRC 102491 [BCYY]
77925
78014
+
Ser
TGA
[ENA]
¡û
>W1610729505
LMIB01000001
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
867012
867101
+
Ser
TGA
[ENA]
¡û
>W1610730463
LMIV01000001
Alphaproteobacteria
Sphingomonas sp. Root241 [LMIV]
1503154
1503065
-
Ser
TGA
[ENA]
¡û
>WENV077898
AAFX01120634
Soil microbial communities from Minnesota Farm
297
388
+
Ser
TGA
[ENA]
>W1710068690
BCTZ01000004
Alphaproteobacteria
Sphingomonas soli NBRC 100801 [BCTZ]
89641
89552
-
Ser
TGA
[ENA]
¡û
>W1710074373
BCYY01000002
Alphaproteobacteria
Sphingomonas pituitosa NBRC 102491 [BCYY]
77925
78014
+
Ser
TGA
[ENA]
¡û
Identical group No.36816 (4 seq.)
>SRA1003542
SRR002327.12351
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
41
128
+
Ser
TGA
[SRA]
>SRA1003552
SRR002327.21950
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
41
128
+
Ser
TGA
[SRA]
>SRA1003579
SRR002327.42508
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
41
128
+
Ser
TGA
[SRA]
>C151090477
CP012070
Actinomycetota
Arsenicicoccus sp. oral taxon 190 F0371 [CP012070]
659034
658945
-
Ser
TGA
-
¡û
Identical group No.36818 (1 seq.)
>SRA1003786
SRR002327.184317
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
233
144
-
Ser
TGA
[SRA]
Identical group No.40747 (1 seq.)
>SRA1004218
SRR002328.205746
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
200
111
-
Ser
TGA
[SRA]
Identical group No.40749 (3 seq.)
>WENV170634593
FZPR01000146
[FZPR] metagenome; sediment
32
121
+
Ser
TGA
[ENA]
¢þ
>WENV170634604
FZPR01000524
[FZPR] metagenome; sediment
2421
2510
+
Ser
TGA
[ENA]
¢þ
>SRA1004317
SRR002328.271013
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
151
240
+
Ser
TGA
[SRA]
Identical group No.58734 (35 seq.)
>W1710870303
LMKK01000001
Actinomycetota
Agreia sp. Leaf210 [LMKK]
1056621
1056534
-
Ser
TGA
[ENA]
¡û
>W1710872328
LMLX01000001
Actinomycetota
Agreia sp. Leaf244 [LMLX]
593429
593344
-
Pseudo
TGA
[ENA]
¡û
>W1710873960
LMNF01000001
Actinomycetota
Agreia sp. Leaf283 [LMNF]
598898
598813
-
Pseudo
TGA
[ENA]
¡û
>W1710874377
LMNO01000001
Actinomycetota
Rathayibacter sp. Leaf294 [LMNO]
245451
245364
-
Ser
TGA
[ENA]
¡û
>W1710875733
LMOQ01000001
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
209419
209506
+
Ser
TGA
[ENA]
¡û
>W1710876842
LMPP01000001
Actinomycetota
Rathayibacter sp. Leaf185 [LMPP]
245214
245127
-
Ser
TGA
[ENA]
¡û
>WENV180017034
FSWJ01000677
[FSWJ] metagenome; soil
3488
3403
-
Ser
TGA
[ENA]
¢þ
>WENV180024116
FTIF01050752
[FTIF] metagenome; soil
331
416
+
Ser
TGA
[ENA]
¢þ
>C191056199
CP028129
Actinomycetota
Rathayibacter rathayi DSM 7485 [CP028129]
266713
266799
+
Ser
TGA
-
¡û
>C191056499
CP028137
Actinomycetota
Rathayibacter festucae DSM 15932 [CP028137]
109617
109704
+
Ser
TGA
-
¡û
>W1911497485
OCNL01000003
Actinomycetota
Rathayibacter rathayi VKM Ac-1601 [OCNL]
291414
291500
+
Ser
TGA
[ENA]
¡û
>W1810277774
PSUD01000006
Actinomycetota
Rathayibacter rathayi AY2B6 [PSUD]
50115
50201
+
Ser
TGA
[ENA]
¡û
>W1810277991
PSUI01000012
Actinomycetota
Rathayibacter rathayi AY2A9 [PSUI]
66138
66052
-
Ser
TGA
[ENA]
¡û
>W1810278026
PSUJ01000006
Actinomycetota
Rathayibacter rathayi AY2A5 [PSUJ]
66122
66036
-
Ser
TGA
[ENA]
¡û
>W1810278295
PSUP01000011
Actinomycetota
Rathayibacter rathayi ICMP 2576 [PSUP]
66136
66050
-
Ser
TGA
[ENA]
¡û
>W1810278325
PSUQ01000004
Actinomycetota
Rathayibacter rathayi ICMP 2572 [PSUQ]
58768
58854
+
Ser
TGA
[ENA]
¡û
>W1810279504
PSVR01000013
Actinomycetota
Rathayibacter rathayi AY1D8 [PSVR]
50130
50216
+
Ser
TGA
[ENA]
¡û
>W1810279901
PSWA01000026
Actinomycetota
Rathayibacter rathayi AY1C8 [PSWA]
16779
16865
+
Ser
TGA
[ENA]
¡û
>W1810280230
PSWI01000010
Actinomycetota
Rathayibacter rathayi AY1B9 [PSWI]
22844
22758
-
Ser
TGA
[ENA]
¡û
>W1810280518
PSWP01000004
Actinomycetota
Rathayibacter rathayi AY1A8 [PSWP]
66135
66049
-
Ser
TGA
[ENA]
¡û
>W1810281669
PSXP01000004
Actinomycetota
Rathayibacter rathayi Z015 [PSXP]
50085
50171
+
Ser
TGA
[ENA]
¡û
>W1810281755
PSXR01000015
Actinomycetota
Rathayibacter rathayi CS6 [PSXR]
8831
8917
+
Ser
TGA
[ENA]
¡û
>W1810281996
PSXW01000013
Actinomycetota
Clavibacter michiganensis AY2B8 [PSXW]
9057
8970
-
Ser
TGA
[ENA]
¡û
>W1810577907
QEOP01000001
Actinomycetota
Amnibacterium flavum M8JJ-5 [QEOP]
721058
721143
+
Ser
TGA
[ENA]
¡û
>SRA1003138
SRR002326.234438
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
233
148
-
Ser
TGA
[SRA]
>W1511524519
JYFC01000006
Actinomycetota
Agreia bicolorata VKM Ac-1804 [JYFC]
23584
23671
+
Ser
TGA
[ENA]
¡û
>W1610732649
LMKK01000001
Actinomycetota
Agreia sp. Leaf210 [LMKK]
1056621
1056534
-
Ser
TGA
[ENA]
¡û
>W1610734674
LMLX01000001
Actinomycetota
Agreia sp. Leaf244 [LMLX]
593429
593344
-
Pseudo
TGA
[ENA]
¡û
>W1610736306
LMNF01000001
Actinomycetota
Agreia sp. Leaf283 [LMNF]
598898
598813
-
Pseudo
TGA
[ENA]
¡û
>W1610736723
LMNO01000001
Actinomycetota
Rathayibacter sp. Leaf294 [LMNO]
245451
245364
-
Ser
TGA
[ENA]
¡û
>W1610738079
LMOQ01000001
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
209419
209506
+
Ser
TGA
[ENA]
¡û
>W1610739188
LMPP01000001
Actinomycetota
Rathayibacter sp. Leaf185 [LMPP]
245214
245127
-
Ser
TGA
[ENA]
¡û
>W1710602478
FUYG01000001
Actinomycetota
Agreia bicolorata VKM Ac-2052 [FUYG]
242292
242379
+
Ser
TGA
[ENA]
¡û
>W1710608509
FXAY01000001
Actinomycetota
Agreia pratensis [FXAY]
865452
865365
-
Ser
TGA
[ENA]
¡û
>W1710609318
FXWI01000004
Actinomycetota
Agreia sp. VKM Ac-1783 [FXWI]
63098
63011
-
Ser
TGA
[ENA]
¡û
Identical group No.59094 (10 seq.)
>W1711179137
LWHJ01000027
Bacteroidota
Pedobacter psychrophilus CCM 8644 [LWHJ]
395304
395219
-
Ser
TGA
[ENA]
¡û
>W141027932
AKZJ01000009
Bacteroidota
Pedobacter arcticus A12 [AKZJ]
39982
40067
+
Ser
TGA
[ENA]
¡û
>W141727616
JNFF01000017
Bacteroidota
Pedobacter antarcticus 4BY [JNFF]
18307
18394
+
Ser
TGA
[ENA]
¡û
>W141727654
JNFF01000116
Bacteroidota
Pedobacter antarcticus 4BY [JNFF]
147338
147425
+
Ser
TGA
[ENA]
¡û
>SRA1003609
SRR002327.66935
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
259
174
-
Ser
TGA
[SRA]
>W1610987089
LWHJ01000027
Bacteroidota
Pedobacter psychrophilus CCM 8644 [LWHJ]
395304
395219
-
Ser
TGA
[ENA]
¡û
>W1710522128
FNGZ01000001
Bacteroidota
Pedobacter antarcticus [FNGZ]
489429
489342
-
Ser
TGA
[ENA]
¡û
>W1710522132
FNGZ01000002
Bacteroidota
Pedobacter antarcticus [FNGZ]
775294
775209
-
Ser
TGA
[ENA]
¡û
>W1710560846
FONS01000001
Bacteroidota
Pedobacter antarcticus [FONS]
283673
283760
+
Ser
TGA
[ENA]
¡û
>W1710560862
FONS01000004
Bacteroidota
Pedobacter antarcticus [FONS]
237210
237123
-
Ser
TGA
[ENA]
¡û
Identical group No.60840 (2 seq.)
>SRA1002942
SRR002326.113689
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
285
200
-
Ser
TGA
[SRA]
>SRA1003387
SRR002326.430603
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
232
147
-
Ser
TGA
[SRA]
Identical group No.60841 (2 seq.)
>C181064513
CP022423
Betaproteobacteria
Vitreoscilla filiformis ATCC 15551 [CP022423]
241748
241835
+
Ser
TGA
-
¡û
>SRA1002979
SRR002326.132558
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
175
88
-
Ser
TGA
[SRA]
Identical group No.60842 (43 seq.)
>W1711751395
MUNS01000025
Betaproteobacteria
Polaromonas sp. C04 [MUNS]
76821
76734
-
Ser
TGA
[ENA]
¡û
>W131066648
ANOY01001294
Betaproteobacteria
Pseudacidovorax intermedius NH-1 [ANOY]
4841
4928
+
Ser
TGA
[ENA]
¡û
>W131174775
ARIS01000075
Betaproteobacteria
Thiomonas sp. FB-6 [ARIS]
142028
141941
-
Ser
TGA
[ENA]
¡û
>W131214626
ATUI01000019
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 [ATUI]
45692
45779
+
Ser
TGA
[ENA]
¡û
>W131229577
AUGX01000008
Betaproteobacteria
Ottowia thiooxydans DSM 14619 [AUGX]
232904
232991
+
Ser
TGA
[ENA]
¡û
>WENV180343800
OBLK01093703
[OBLK] soil metagenome; Clay
376
289
-
Ser
TGA
[ENA]
¢þ
>WENV181187923
OEOE01002810
[OEOE] activated sludge metagenome; Activated Sludge
1321
1234
-
Ser
TGA
[ENA]
¢þ
>WENV181311164
OFJB01000094
[OFJB] sludge metagenome; sludge
37262
37175
-
Ser
TGA
[ENA]
¢þ
>WENV181363118
OFOS01000030
[OFOS] sediment metagenome; Lake sediment
2061
1974
-
Ser
TGA
[ENA]
¢þ
>WENV181364508
OFOW01000303
[OFOW] sediment metagenome; Lake sediment
2058
1971
-
Ser
TGA
[ENA]
¢þ
>WENV181364551
OFOY01000028
[OFOY] sediment metagenome; Lake sediment
2073
1986
-
Ser
TGA
[ENA]
¢þ
>WENV181364654
OFPA01000035
[OFPA] sediment metagenome; Lake sediment
2061
1974
-
Ser
TGA
[ENA]
¢þ
>WENV181364824
OFPE01000219
[OFPE] sediment metagenome; Lake sediment
692
779
+
Ser
TGA
[ENA]
¢þ
>WENV181364935
OFPG01000152
[OFPG] sediment metagenome; Lake sediment
7570
7483
-
Ser
TGA
[ENA]
¢þ
>WENV181365146
OFPK01000033
[OFPK] sediment metagenome; Lake sediment
40720
40807
+
Ser
TGA
[ENA]
¢þ
>WENV181365290
OFPN01000037
[OFPN] sediment metagenome; Lake sediment
2061
1974
-
Ser
TGA
[ENA]
¢þ
>WENV181365332
OFPO01000098
[OFPO] sediment metagenome; Lake sediment
11843
11930
+
Ser
TGA
[ENA]
¢þ
>WENV181365395
OFPQ01000174
[OFPQ] sediment metagenome; Lake sediment
2008
1921
-
Ser
TGA
[ENA]
¢þ
>WENV181401684
OFTX01002651
[OFTX] sludge metagenome; sludge
2171
2258
+
Ser
TGA
[ENA]
¢þ
>WENV170609362
FUWD011382601
[FUWD] metagenome; unknown
116
203
+
Ser
TGA
[ENA]
¢þ
>WENV170639356
JFJP01002036
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
9163
9250
+
Ser
TGA
[ENA]
¢þ
>WENV170651451
JRYF01018469
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
1230
1317
+
Ser
TGA
[ENA]
¢þ
>WENV170961808
MLJW01001618
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
2942
2855
-
Ser
TGA
[ENA]
¢þ
>C181000503
AP014836
Gammaproteobacteria
Candidatus Nitrosoglobus terrae TAO100 [AP014836]
1075814
1075901
+
Ser
TGA
-
¡û
>W1910175579
BJCL01000001
Betaproteobacteria
Rubrivivax pictus W35 [BJCL]
807716
807803
+
Ser
TGA
[ENA]
¡û
>SRA1003034
SRR002326.163161
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
91
4
-
Ser
TGA
[SRA]
>W1810666652
QJOU01000017
Betaproteobacteria
Piscinibacter caeni MQ-18 [QJOU]
87422
87335
-
Ser
TGA
[ENA]
¡û
>W1810763097
QQAV01000003
Betaproteobacteria
Pseudacidovorax intermedius DSM 21352 [QQAV]
18493
18406
-
Ser
TGA
[ENA]
¡û
>W1510021338
BBYR01000002
Betaproteobacteria
Piscinibacter sakaiensis 201-F6 [BBYR]
72876
72789
-
Ser
TGA
[ENA]
¡û
>C10101140
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
1024187
1024100
-
Ser
TGA
[Ensembl]
¡û
>W11150930
AEWG01000119
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 [AEWG]
5400
5487
+
Ser
TGA
[ENA]
¡û
>C121001128
AP012320
Betaproteobacteria
Rubrivivax gelatinosus IL144 [AP012320]
1903399
1903312
-
Ser
TGA
[Ensembl]
¡û
>W121036367
AHLZ01000003
Betaproteobacteria
Burkholderiales bacterium JOSHI_001 [AHLZ]
576717
576630
-
Ser
TGA
[ENA]
¡û
>W121060106
AJFF01000174
Betaproteobacteria
Rubrivivax gelatinosus CBS [AJFF]
7083
7170
+
Ser
TGA
[ENA]
¡û
>W121060107
AJFF01000174
Betaproteobacteria
Rubrivivax gelatinosus CBS [AJFF]
1004
917
-
Ser
TGA
[ENA]
¡û
>W1610074340
BCWP01000002
Betaproteobacteria
Curvibacter delicatus NBRC 14919 [BCWP]
42506
42593
+
Ser
TGA
[ENA]
¡û
>W1610591920
LDSL01000004
Betaproteobacteria
Pseudacidovorax intermedius [LDSL]
46461
46548
+
Ser
TGA
[ENA]
¡û
>WENV079986
AATO01000138
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
259
346
+
Ser
TGA
[ENA]
>WENV080027
AATO01001055
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
923
836
-
Ser
TGA
[ENA]
>W1710071458
BCWP01000002
Betaproteobacteria
Curvibacter delicatus NBRC 14919 [BCWP]
42506
42593
+
Ser
TGA
[ENA]
¡û
>W1710579559
FPIQ01000001
Betaproteobacteria
Nitrosovibrio sp. Nv17 [FPIQ]
377984
378071
+
Ser
TGA
[ENA]
¡û
>W1710597087
FTMY01000006
Betaproteobacteria
Pseudacidovorax sp. RU35E [FTMY]
14326
14239
-
Ser
TGA
[ENA]
¡û
>W1710711200
LDSL01000004
Betaproteobacteria
Pseudacidovorax intermedius [LDSL]
46461
46548
+
Ser
TGA
[ENA]
¡û
Identical group No.60849 (2 seq.)
>SRA1003466
SRR002326.485946
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
116
29
-
Ser
TGA
[SRA]
>SRA1003515
SRR002326.518153
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
117
30
-
Ser
TGA
[SRA]
Identical group No.60857 (4 seq.)
>SRA1003343
SRR002326.402396
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
41
126
+
Ser
TGA
[SRA]
>SRA1004013
SRR002328.96127
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
273
188
-
Ser
TGA
[SRA]
>SRA1004025
SRR002328.101447
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
102
17
-
Ser
TGA
[SRA]
>SRA1004077
SRR002328.135231
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
73
158
+
Ser
TGA
[SRA]
Identical group No.63469 (6 seq.)
>W131218690
ATXY01000006
Bacteroidota
Flectobacillus major DSM 103 [ATXY]
2593812
2593899
+
Ser
TGA
[ENA]
¡û
>WENV181384247
OFRH01044025
[OFRH] wastewater metagenome; Exp Tend NO 100WW
193
280
+
Ser
TGA
[ENA]
¢þ
>WENV170987337
MWVX01172338
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
482
569
+
Ser
TGA
[ENA]
¢þ
>W1910941828
NJFZ01000010
Bacteroidota
Flectobacillus sp. BAB-3569 [NJFZ]
196658
196571
-
Ser
TGA
[ENA]
¡û
>W1910941829
NJFZ01000010
Bacteroidota
Flectobacillus sp. BAB-3569 [NJFZ]
193661
193574
-
Ser
TGA
[ENA]
¡û
>SRA1003650
SRR002327.94682
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
163
78
-
Ser
TGA
[SRA]
Identical group No.80792 (1 seq.)
>SRA1003519
SRR002326.521856
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
231
147
-
Ser
TGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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