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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
35 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>ENV08001642
ABNJ01240546
451622
Gammaproteobacteria
GGT
Thr
>ENV08001582
ABNJ01037107
457439
Gammaproteobacteria
GTT
Asn
>ENV08001627
ABNJ01138625
457439
Gammaproteobacteria
GTT
Asn
>ENV08001568
ABNJ01012187
181632
Gammaproteobacteria
GTA
Tyr
>ENV08001571
ABNJ01014553
181632
Gammaproteobacteria
GTA
Tyr
>ENV08001577
ABNJ01025286
181632
Gammaproteobacteria
GTA
Tyr
>ENV08001578
ABNJ01026707
181632
Gammaproteobacteria
GTA
Tyr
>ENV08001597
ABNJ01060159
181632
Gammaproteobacteria
GTA
Tyr
>ENV08001600
ABNJ01069133
181632
Gammaproteobacteria
GTA
Tyr
>ENV08001608
ABNJ01079185
181632
Gammaproteobacteria
GTA
Tyr
>ENV08001611
ABNJ01095082
181632
Gammaproteobacteria
GTA
Tyr
>ENV08001603
ABNJ01073564
460706
Gammaproteobacteria
TAC
Val
>ENV08001586
ABNJ01048922
276164
Gammaproteobacteria
GAC
Val
>ENV08001595
ABNJ01058967
113942
Gammaproteobacteria
CAA
Leu
>ENV08001598
ABNJ01066172
113942
Gammaproteobacteria
CAA
Leu
>ENV08001601
ABNJ01071777
113942
Gammaproteobacteria
CAA
Leu
>ENV08001604
ABNJ01074247
113942
Gammaproteobacteria
CAA
Leu
>ENV08001622
ABNJ01122532
113942
Gammaproteobacteria
CAA
Leu
>ENV08001564
ABNJ01001860
457441
Gammaproteobacteria
TTC
Glu
>ENV08001631
ABNJ01142409
658273
Gammaproteobacteria
TTG
Gln
>ENV08001567
ABNJ01011845
30727
Gammaproteobacteria
TGA
Ser
>ENV08001569
ABNJ01014397
30727
Gammaproteobacteria
TGA
Ser
>ENV08001576
ABNJ01024515
30727
Gammaproteobacteria
TGA
Ser
>ENV08001628
ABNJ01139417
457435
Gammaproteobacteria
GCC
Gly
>ENV08001636
ABNJ01175534
457435
Gammaproteobacteria
GCC
Gly
>ENV08001640
ABNJ01195965
457435
Gammaproteobacteria
GCC
Gly
>ENV08001641
ABNJ01201833
457435
Gammaproteobacteria
GCC
Gly
>ENV08001574
ABNJ01021258
113276
Gammaproteobacteria
TAA
Leu
>ENV08001570
ABNJ01014523
5834
Gammaproteobacteria
>ENV08001575
ABNJ01021466
455973
Gammaproteobacteria
TTT
Lys
>ENV08001579
ABNJ01033385
455973
Gammaproteobacteria
TTT
Lys
>ENV08001610
ABNJ01089745
455973
Gammaproteobacteria
TTT
Lys
>ENV08001643
ABNJ01264077
455973
Gammaproteobacteria
TTT
Lys
>ENV08001630
ABNJ01140808
276153
Gammaproteobacteria
TGG
Pro
>ENV08001638
ABNJ01191548
276153
Gammaproteobacteria
TGG
Pro
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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