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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA gene List
Marine Viruses from Arctic Ocean (SRP000129)
HIT:
120 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>SRA1000170
SRR001036.254863
Marine Viruses from Arctic Ocean (SRP000129)
70
-1
-
Cys
GCA
[SRA]
>SRA1000144
SRR001036.62649
Marine Viruses from Arctic Ocean (SRP000129)
71
-1
-
Glu
CTC
[SRA]
>SRA1000203
SRR001036.341960
Marine Viruses from Arctic Ocean (SRP000129)
73
-1
-
Pro
CGG
[SRA]
>SRA1000143
SRR001036.57853
Marine Viruses from Arctic Ocean (SRP000129)
73
-1
-
Met
CAT
[SRA]
>SRA1000182
SRR001036.287392
Marine Viruses from Arctic Ocean (SRP000129)
87
-1
-
Ser
GGA
[SRA]
>SRA1000196
SRR001036.321112
Marine Viruses from Arctic Ocean (SRP000129)
76
1
-
Pro
GGG
[SRA]
>SRA1000145
SRR001036.63228
Marine Viruses from Arctic Ocean (SRP000129)
76
1
-
Met
CAT
[SRA]
>SRA1000209
SRR001037.32371
Marine Viruses from Arctic Ocean (SRP000129)
76
1
-
Arg
CCG
[SRA]
>SRA1000177
SRR001036.271529
Marine Viruses from Arctic Ocean (SRP000129)
91
1
-
Ser
CGA
[SRA]
>SRA1000257
SRR001037.323221
Marine Viruses from Arctic Ocean (SRP000129)
88
2
-
Leu
GAG
[SRA]
>SRA1000193
SRR001036.303076
Marine Viruses from Arctic Ocean (SRP000129)
86
3
-
Leu
GAG
[SRA]
>SRA1000246
SRR001037.264567
Marine Viruses from Arctic Ocean (SRP000129)
88
4
-
Leu
TAG
[SRA]
>SRA1000221
SRR001037.119182
Marine Viruses from Arctic Ocean (SRP000129)
79
5
-
Thr
GGT
[SRA]
>SRA1000251
SRR001037.297376
Marine Viruses from Arctic Ocean (SRP000129)
80
5
-
Lys
CTT
[SRA]
>SRA1000151
SRR001036.108551
Marine Viruses from Arctic Ocean (SRP000129)
81
5
-
Arg
CCG
[SRA]
>SRA1000184
SRR001036.294730
Marine Viruses from Arctic Ocean (SRP000129)
81
5
-
Arg
CCG
[SRA]
>SRA1000202
SRR001036.340337
Marine Viruses from Arctic Ocean (SRP000129)
81
5
-
Asp
GTC
[SRA]
>SRA1000150
SRR001036.97247
Marine Viruses from Arctic Ocean (SRP000129)
81
5
-
Arg
CCG
[SRA]
>SRA1000256
SRR001037.318870
Marine Viruses from Arctic Ocean (SRP000129)
81
5
-
Pro
TGG
[SRA]
>SRA1000180
SRR001036.282477
Marine Viruses from Arctic Ocean (SRP000129)
95
6
-
Ser
CGA
[SRA]
>SRA1000228
SRR001037.152163
Marine Viruses from Arctic Ocean (SRP000129)
81
7
-
Glu
TTC
[SRA]
>SRA1000253
SRR001037.304240
Marine Viruses from Arctic Ocean (SRP000129)
82
7
-
Val
TAC
[SRA]
>SRA1000245
SRR001037.255303
Marine Viruses from Arctic Ocean (SRP000129)
83
7
-
His
GTG
[SRA]
>SRA1000142
SRR001036.54980
Marine Viruses from Arctic Ocean (SRP000129)
92
7
-
Tyr
GTA
[SRA]
>SRA1000243
SRR001037.245646
Marine Viruses from Arctic Ocean (SRP000129)
82
8
-
Val
CAC
[SRA]
>SRA1000229
SRR001037.169428
Marine Viruses from Arctic Ocean (SRP000129)
84
8
-
Phe
GAA
[SRA]
>SRA1000234
SRR001037.194896
Marine Viruses from Arctic Ocean (SRP000129)
85
9
-
Met
CAT
[SRA]
>SRA1000188
SRR001036.300629
Marine Viruses from Arctic Ocean (SRP000129)
84
10
-
Met
CAT
[SRA]
>SRA1000241
SRR001037.243177
Marine Viruses from Arctic Ocean (SRP000129)
84
10
-
Met
CAT
[SRA]
>SRA1000204
SRR001036.353905
Marine Viruses from Arctic Ocean (SRP000129)
85
10
-
Val
TAC
[SRA]
>SRA1000220
SRR001037.116516
Marine Viruses from Arctic Ocean (SRP000129)
85
10
-
Lys
CTT
[SRA]
>SRA1000165
SRR001036.201798
Marine Viruses from Arctic Ocean (SRP000129)
86
12
-
Val
GAC
[SRA]
>SRA1000199
SRR001036.329136
Marine Viruses from Arctic Ocean (SRP000129)
86
12
-
Gly
CCC
[SRA]
>SRA1000213
SRR001037.68319
Marine Viruses from Arctic Ocean (SRP000129)
86
12
-
Val
GAC
[SRA]
>SRA1000217
SRR001037.114078
Marine Viruses from Arctic Ocean (SRP000129)
85
13
-
Gln
CTG
[SRA]
>SRA1000222
SRR001037.122192
Marine Viruses from Arctic Ocean (SRP000129)
87
14
-
Gly
TCC
[SRA]
>SRA1000244
SRR001037.250495
Marine Viruses from Arctic Ocean (SRP000129)
91
15
-
Pro
TGG
[SRA]
>SRA1000227
SRR001037.149919
Marine Viruses from Arctic Ocean (SRP000129)
90
16
-
Met
CAT
[SRA]
>SRA1000163
SRR001036.194936
Marine Viruses from Arctic Ocean (SRP000129)
92
16
-
Asp
GTC
[SRA]
>SRA1000235
SRR001037.204687
Marine Viruses from Arctic Ocean (SRP000129)
92
16
-
Pro
GGG
[SRA]
>SRA1000255
SRR001037.317602
Marine Viruses from Arctic Ocean (SRP000129)
93
16
-
Asp
GTC
[SRA]
>SRA1000205
SRR001036.354125
Marine Viruses from Arctic Ocean (SRP000129)
106
16
-
Ser
GCT
[SRA]
>SRA1000181
SRR001036.286235
Marine Viruses from Arctic Ocean (SRP000129)
95
19
-
Met
CAT
[SRA]
>SRA1000186
SRR001036.298307
Marine Viruses from Arctic Ocean (SRP000129)
95
19
-
Met
CAT
[SRA]
>SRA1000201
SRR001036.338026
Marine Viruses from Arctic Ocean (SRP000129)
95
19
-
Met
CAT
[SRA]
>SRA1000216
SRR001037.105956
Marine Viruses from Arctic Ocean (SRP000129)
95
19
-
Ile
GAT
[SRA]
>SRA1000248
SRR001037.287695
Marine Viruses from Arctic Ocean (SRP000129)
95
19
-
Ile
GAT
[SRA]
>SRA1000219
SRR001037.115269
Marine Viruses from Arctic Ocean (SRP000129)
109
19
-
Ser
CGA
[SRA]
>SRA1000178
SRR001036.279971
Marine Viruses from Arctic Ocean (SRP000129)
94
20
-
Glu
CTC
[SRA]
>SRA1000152
SRR001036.115996
Marine Viruses from Arctic Ocean (SRP000129)
96
20
-
Ile
GAT
[SRA]
>SRA1000226
SRR001037.146473
Marine Viruses from Arctic Ocean (SRP000129)
109
20
-
Ser
CGA
[SRA]
>SRA1000187
SRR001036.299297
Marine Viruses from Arctic Ocean (SRP000129)
110
20
-
Ser
GGA
[SRA]
>SRA1000146
SRR001036.74970
Marine Viruses from Arctic Ocean (SRP000129)
106
21
-
Leu
TAG
[SRA]
>SRA1000198
SRR001036.326252
Marine Viruses from Arctic Ocean (SRP000129)
94
22
-
Cys
GCA
[SRA]
>SRA1000254
SRR001037.304323
Marine Viruses from Arctic Ocean (SRP000129)
98
23
-
Lys
CTT
[SRA]
>SRA1000190
SRR001036.302365
Marine Viruses from Arctic Ocean (SRP000129)
99
23
-
Met
CAT
[SRA]
>SRA1000231
SRR001037.175322
Marine Viruses from Arctic Ocean (SRP000129)
99
24
-
Trp
CCA
[SRA]
>SRA1000238
SRR001037.230873
Marine Viruses from Arctic Ocean (SRP000129)
99
24
-
Trp
CCA
[SRA]
>SRA1000169
SRR001036.251743
Marine Viruses from Arctic Ocean (SRP000129)
108
24
-
Leu
CAA
[SRA]
>SRA1000174
SRR001036.268718
Marine Viruses from Arctic Ocean (SRP000129)
101
25
-
Ile
GAT
[SRA]
>SRA1000183
SRR001036.292559
Marine Viruses from Arctic Ocean (SRP000129)
101
25
-
Met
CAT
[SRA]
>SRA1000140
SRR001036.40641
Marine Viruses from Arctic Ocean (SRP000129)
102
27
-
Ala
TGC
[SRA]
>SRA1000206
SRR001036.360940
Marine Viruses from Arctic Ocean (SRP000129)
104
28
-
Arg
CCT
[SRA]
>SRA1000157
SRR001036.155457
Marine Viruses from Arctic Ocean (SRP000129)
114
29
-
Tyr
GTA
[SRA]
>SRA1000158
SRR001036.161401
Marine Viruses from Arctic Ocean (SRP000129)
114
29
-
Tyr
GTA
[SRA]
>SRA1000162
SRR001036.192804
Marine Viruses from Arctic Ocean (SRP000129)
117
29
-
Ser
TGA
[SRA]
>SRA1000232
SRR001037.181101
Marine Viruses from Arctic Ocean (SRP000129)
106
31
-
Lys
TTT
[SRA]
>SRA1000166
SRR001036.218364
Marine Viruses from Arctic Ocean (SRP000129)
108
32
-
His
GTG
[SRA]
>SRA1000176
SRR001036.269671
Marine Viruses from Arctic Ocean (SRP000129)
116
32
-
Leu
GAG
[SRA]
>SRA1000211
SRR001037.63815
Marine Viruses from Arctic Ocean (SRP000129)
107
33
-
Met
CAT
[SRA]
>SRA1000240
SRR001037.239803
Marine Viruses from Arctic Ocean (SRP000129)
109
33
-
His
GTG
[SRA]
>SRA1000194
SRR001036.306191
Marine Viruses from Arctic Ocean (SRP000129)
111
35
-
Asp
GTC
[SRA]
>SRA1000189
SRR001036.301907
Marine Viruses from Arctic Ocean (SRP000129)
115
38
-
Ile
GAT
[SRA]
>SRA1000168
SRR001036.245786
Marine Viruses from Arctic Ocean (SRP000129)
120
44
-
Asn
GTT
[SRA]
>SRA1000138
SRR001036.13476
Marine Viruses from Arctic Ocean (SRP000129)
122
46
-
His
GTG
[SRA]
>SRA1000200
SRR001036.332716
Marine Viruses from Arctic Ocean (SRP000129)
4
76
+
Thr
GGT
[SRA]
>SRA1000247
SRR001037.270549
Marine Viruses from Arctic Ocean (SRP000129)
2
77
+
Ala
GGC
[SRA]
>SRA1000225
SRR001037.144762
Marine Viruses from Arctic Ocean (SRP000129)
3
79
+
Arg
CCT
[SRA]
>SRA1000197
SRR001036.325059
Marine Viruses from Arctic Ocean (SRP000129)
7
81
+
Glu
CTC
[SRA]
>SRA1000147
SRR001036.89480
Marine Viruses from Arctic Ocean (SRP000129)
6
82
+
Met
CAT
[SRA]
>SRA1000215
SRR001037.96006
Marine Viruses from Arctic Ocean (SRP000129)
6
82
+
Pro
TGG
[SRA]
>SRA1000192
SRR001036.302952
Marine Viruses from Arctic Ocean (SRP000129)
1
85
+
Leu
CAA
[SRA]
>SRA1000154
SRR001036.141999
Marine Viruses from Arctic Ocean (SRP000129)
11
86
+
Ala
TGC
[SRA]
>SRA1000249
SRR001037.293926
Marine Viruses from Arctic Ocean (SRP000129)
11
86
+
Ala
TGC
[SRA]
>SRA1000212
SRR001037.67559
Marine Viruses from Arctic Ocean (SRP000129)
11
86
+
Thr
CGT
[SRA]
>SRA1000185
SRR001036.295160
Marine Viruses from Arctic Ocean (SRP000129)
12
87
+
Val
TAC
[SRA]
>SRA1000172
SRR001036.261891
Marine Viruses from Arctic Ocean (SRP000129)
12
88
+
Arg
ACG
[SRA]
>SRA1000149
SRR001036.93448
Marine Viruses from Arctic Ocean (SRP000129)
12
88
+
Arg
ACG
[SRA]
>SRA1000214
SRR001037.79778
Marine Viruses from Arctic Ocean (SRP000129)
12
88
+
Arg
ACG
[SRA]
>SRA1000156
SRR001036.153592
Marine Viruses from Arctic Ocean (SRP000129)
5
89
+
Leu
GAG
[SRA]
>SRA1000224
SRR001037.136781
Marine Viruses from Arctic Ocean (SRP000129)
5
89
+
Leu
GAG
[SRA]
>SRA1000155
SRR001036.149757
Marine Viruses from Arctic Ocean (SRP000129)
17
91
+
Asn
GTT
[SRA]
>SRA1000250
SRR001037.295113
Marine Viruses from Arctic Ocean (SRP000129)
17
91
+
Gly
GCC
[SRA]
>SRA1000139
SRR001036.40545
Marine Viruses from Arctic Ocean (SRP000129)
17
92
+
Ala
CGC
[SRA]
>SRA1000159
SRR001036.165855
Marine Viruses from Arctic Ocean (SRP000129)
20
93
+
Val
GAC
[SRA]
>SRA1000167
SRR001036.221522
Marine Viruses from Arctic Ocean (SRP000129)
5
94
+
Leu
GAG
[SRA]
>SRA1000230
SRR001037.174595
Marine Viruses from Arctic Ocean (SRP000129)
10
95
+
Leu
CAA
[SRA]
>SRA1000160
SRR001036.166887
Marine Viruses from Arctic Ocean (SRP000129)
12
96
+
Leu
TAG
[SRA]
>SRA1000239
SRR001037.234503
Marine Viruses from Arctic Ocean (SRP000129)
24
97
+
Gly
TCC
[SRA]
>SRA1000210
SRR001037.50221
Marine Viruses from Arctic Ocean (SRP000129)
7
98
+
Ser
GCT
[SRA]
>SRA1000233
SRR001037.191235
Marine Viruses from Arctic Ocean (SRP000129)
7
99
+
Ser
GCT
[SRA]
>SRA1000141
SRR001036.40868
Marine Viruses from Arctic Ocean (SRP000129)
23
99
+
Pro
TGG
[SRA]
>SRA1000161
SRR001036.192405
Marine Viruses from Arctic Ocean (SRP000129)
24
99
+
Pro
CGG
[SRA]
>SRA1000173
SRR001036.262453
Marine Viruses from Arctic Ocean (SRP000129)
10
101
+
Ser
GCT
[SRA]
>SRA1000148
SRR001036.91204
Marine Viruses from Arctic Ocean (SRP000129)
28
104
+
Met
CAT
[SRA]
>SRA1000223
SRR001037.125674
Marine Viruses from Arctic Ocean (SRP000129)
31
104
+
Gly
GCC
[SRA]
>SRA1000236
SRR001037.217667
Marine Viruses from Arctic Ocean (SRP000129)
16
105
+
Ser
TGA
[SRA]
>SRA1000218
SRR001037.114821
Marine Viruses from Arctic Ocean (SRP000129)
32
106
+
Gly
GCC
[SRA]
>SRA1000175
SRR001036.269298
Marine Viruses from Arctic Ocean (SRP000129)
17
107
+
Ser
GGA
[SRA]
>SRA1000207
SRR001036.364529
Marine Viruses from Arctic Ocean (SRP000129)
31
107
+
Met
CAT
[SRA]
>SRA1000153
SRR001036.129768
Marine Viruses from Arctic Ocean (SRP000129)
34
108
+
Met
CAT
[SRA]
>SRA1000164
SRR001036.200981
Marine Viruses from Arctic Ocean (SRP000129)
31
109
+
Pro
TGG
[SRA]
>SRA1000252
SRR001037.302294
Marine Viruses from Arctic Ocean (SRP000129)
33
109
+
Glu
TTC
[SRA]
>SRA1000171
SRR001036.257084
Marine Viruses from Arctic Ocean (SRP000129)
37
111
+
Arg
ACG
[SRA]
>SRA1000191
SRR001036.302815
Marine Viruses from Arctic Ocean (SRP000129)
40
111
+
Thr
GGT
[SRA]
>SRA1000208
SRR001037.1428
Marine Viruses from Arctic Ocean (SRP000129)
30
113
+
Tyr
GTA
[SRA]
>SRA1000237
SRR001037.225736
Marine Viruses from Arctic Ocean (SRP000129)
39
115
+
Glu
TTC
[SRA]
>SRA1000179
SRR001036.281135
Marine Viruses from Arctic Ocean (SRP000129)
41
116
+
Glu
CTC
[SRA]
>SRA1000195
SRR001036.309583
Marine Viruses from Arctic Ocean (SRP000129)
44
117
+
Glu
CTC
[SRA]
>SRA1000242
SRR001037.245188
Marine Viruses from Arctic Ocean (SRP000129)
44
117
+
Glu
CTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK