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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
Anticodon = GCT
HIT:
31 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.9239 (1 seq.)
>SRA1003451
SRR002326.477634
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
11
104
+
Ser
GCT
[SRA]
Identical group No.10781 (1 seq.)
>SRA1003928
SRR002328.42726
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
98
5
-
Ser
GCT
[SRA]
Identical group No.10783 (1 seq.)
>SRA1004230
SRR002328.212969
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
238
147
-
Ser
GCT
[SRA]
Identical group No.13599 (5 seq.)
>W1710893624
LNEY01000016
Betaproteobacteria
Burkholderiales bacterium Ga0077547 [LNEY]
40738
40830
+
Ser
GCT
[ENA]
¡û
>WENV170551998
CXWJ01033755
[CXWJ] wastewater metagenome; activated sludge
3974
4066
+
Ser
GCT
[ENA]
¢þ
>WENV170710883
LNFM01002921
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
12133
12041
-
Ser
GCT
[ENA]
¢þ
>SRA1004160
SRR002328.177282
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
25
117
+
Ser
GCT
[SRA]
>W1610753890
LNEY01000016
Betaproteobacteria
Burkholderiales bacterium Ga0077547 [LNEY]
40738
40830
+
Ser
GCT
[ENA]
¡û
Identical group No.14304 (3 seq.)
>W141561780
JHYS01000015
Betaproteobacteria
Simplicispira psychrophila DSM 11588 [JHYS]
1324
1232
-
Ser
GCT
[ENA]
¡û
>SRA1002791
SRR002326.18270
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
154
246
+
Ser
GCT
[SRA]
>SRA1004264
SRR002328.231206
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
114
206
+
Ser
GCT
[SRA]
Identical group No.14305 (4 seq.)
>SRA1002837
SRR002326.50256
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
88
180
+
Ser
GCT
[SRA]
>SRA1003291
SRR002326.368515
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
15
107
+
Ser
GCT
[SRA]
>SRA1004125
SRR002328.160238
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
53
145
+
Ser
GCT
[SRA]
>SRA1004332
SRR002328.282087
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
53
145
+
Ser
GCT
[SRA]
Identical group No.14307 (1 seq.)
>SRA1003160
SRR002326.252952
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
222
130
-
Ser
GCT
[SRA]
Identical group No.17207 (1 seq.)
>SRA1003902
SRR002328.20744
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
157
249
+
Ser
GCT
[SRA]
Identical group No.17208 (1 seq.)
>SRA1004294
SRR002328.254527
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
98
6
-
Ser
GCT
[SRA]
Identical group No.22542 (1 seq.)
>SRA1002952
SRR002326.119463
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
131
42
-
Ser
GCT
[SRA]
Identical group No.22544 (2 seq.)
>W1711377636
MDZC01000051
Bacteroidota
Hymenobacter glacialis CCM 8648 [MDZC]
55014
54924
-
Ser
GCT
[ENA]
¡û
>SRA1003124
SRR002326.220953
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
31
121
+
Ser
GCT
[SRA]
Identical group No.22545 (1 seq.)
>SRA1003152
SRR002326.245288
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
236
145
-
Ser
GCT
[SRA]
Identical group No.22546 (1 seq.)
>SRA1003189
SRR002326.287555
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
249
161
-
Ser
GCT
[SRA]
Identical group No.26593 (2 seq.)
>C181121428
CP025704
Bdellovibrionota
Bacteriovorax stolpii DSM 12778 [CP025704]
47241
47332
+
Ser
GCT
-
¡û
>SRA1003913
SRR002328.29346
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
95
186
+
Ser
GCT
[SRA]
Identical group No.26594 (2 seq.)
>WENV170977082
MTKZ01016747
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
8089
7998
-
Ser
GCT
[ENA]
¢þ
>SRA1003966
SRR002328.62130
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
131
42
-
Ser
GCT
[SRA]
Identical group No.26598 (3 seq.)
>C181001895
AP017422
Bacteroidota
Filimonas lacunae NBRC 104114 [AP017422]
1526
1615
+
Ser
GCT
-
¡û
>SRA1004174
SRR002328.184097
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
291
202
-
Ser
GCT
[SRA]
>W1710599374
FTOR01000004
Bacteroidota
Filimonas lacunae [FTOR]
306061
305970
-
Ser
GCT
[ENA]
¡û
Identical group No.26604 (1 seq.)
>SRA1004140
SRR002328.168169
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
37
128
+
Ser
GCT
[SRA]
Identical group No.31035 (34 seq.)
>WENV170980795
MWVT01001317
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
4227
4317
+
Ser
GCT
[ENA]
¢þ
>WENV170980980
MWVT01014018
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
1088
1178
+
Ser
GCT
[ENA]
¢þ
>WENV170982092
MWVU01012005
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
535
625
+
Ser
GCT
[ENA]
¢þ
>WENV170982631
MWVU01174461
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
190
100
-
Ser
GCT
[ENA]
¢þ
>WENV170982782
MWVV01000028
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
42106
42196
+
Ser
GCT
[ENA]
¢þ
>WENV170982822
MWVV01000154
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
4865
4955
+
Ser
GCT
[ENA]
¢þ
>WENV170982866
MWVV01000542
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
11114
11204
+
Ser
GCT
[ENA]
¢þ
>WENV170983165
MWVV01009599
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
932
1022
+
Ser
GCT
[ENA]
¢þ
>WENV170983477
MWVV01039503
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
201
291
+
Ser
GCT
[ENA]
¢þ
>WENV170985714
MWVX01000921
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
6266
6356
+
Ser
GCT
[ENA]
¢þ
>WENV170985721
MWVX01001025
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
4011
3921
-
Ser
GCT
[ENA]
¢þ
>WENV170987151
MWVX01133932
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
379
289
-
Ser
GCT
[ENA]
¢þ
>WENV170987205
MWVX01141319
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
445
535
+
Ser
GCT
[ENA]
¢þ
>WENV170987345
MWVX01174110
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
158
248
+
Ser
GCT
[ENA]
¢þ
>WENV170987843
MWVX01292281
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
281
191
-
Ser
GCT
[ENA]
¢þ
>WENV170988909
MWVY01027531
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
358
448
+
Ser
GCT
[ENA]
¢þ
>WENV170989130
MWVZ01000205
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
529
619
+
Ser
GCT
[ENA]
¢þ
>WENV170989274
MWVZ01008121
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
521
431
-
Ser
GCT
[ENA]
¢þ
>WENV170989278
MWVZ01008285
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
1558
1468
-
Ser
GCT
[ENA]
¢þ
>WENV170989653
MWVZ01073320
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
324
234
-
Ser
GCT
[ENA]
¢þ
>WENV170992694
MWWB01068530
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
481
391
-
Ser
GCT
[ENA]
¢þ
>WENV170992700
MWWB01069910
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
271
181
-
Ser
GCT
[ENA]
¢þ
>WENV170993344
MWWB01270131
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
38
128
+
Ser
GCT
[ENA]
¢þ
>WENV170993652
MWWB01387496
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
212
122
-
Ser
GCT
[ENA]
¢þ
>WENV170994057
MWWD01006000
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
1166
1076
-
Ser
GCT
[ENA]
¢þ
>WENV170994058
MWWD01006000
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
107
17
-
Ser
GCT
[ENA]
¢þ
>WENV170994176
MWWD01025824
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
101
191
+
Ser
GCT
[ENA]
¢þ
>WENV170997203
MWWG01048078
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
523
613
+
Ser
GCT
[ENA]
¢þ
>WENV170997300
MWWG01078555
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
407
497
+
Ser
GCT
[ENA]
¢þ
>WENV170997490
MWWG01153094
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
80
170
+
Ser
GCT
[ENA]
¢þ
>WENV170999162
MWWK01001345
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
3733
3823
+
Ser
GCT
[ENA]
¢þ
>WENV170999375
MWWK01038060
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
237
147
-
Ser
GCT
[ENA]
¢þ
>WENV170999588
MWWK01106104
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
137
47
-
Ser
GCT
[ENA]
¢þ
>SRA1004235
SRR002328.215968
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
175
85
-
Ser
GCT
[SRA]
Identical group No.33050 (5 seq.)
>W1711377563
MDZA01000328
Bacteroidota
Hymenobacter coccineus CCM 8649 [MDZA]
33118
33028
-
Ser
GCT
[ENA]
¡û
>C181175078
CP029145
Bacteroidota
Hymenobacter nivis NBRC 111535 [CP029145]
577256
577344
+
Ser
GCT
-
¡û
>SRA1003484
SRR002326.494663
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
220
132
-
Ser
GCT
[SRA]
>C161070716
CP014304
Bacteroidota
Hymenobacter sp. PAMC 26628 [CP014304]
1808688
1808776
+
Ser
GCT
[Ensembl]
¡û
>W1710587465
FQYN01000003
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
148195
148107
-
Ser
GCT
[ENA]
¡û
Identical group No.34518 (1 seq.)
>SRA1002805
SRR002326.30234
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
199
109
-
Ser
GCT
[SRA]
Identical group No.34521 (1 seq.)
>SRA1003011
SRR002326.151476
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
279
189
-
Ser
GCT
[SRA]
Identical group No.34522 (1 seq.)
>SRA1003103
SRR002326.199672
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
102
192
+
Ser
GCT
[SRA]
Identical group No.34869 (7 seq.)
>W1711377586
MDZB01000074
Bacteroidota
Hymenobacter lapidarius CCM 8643 [MDZB]
171566
171476
-
Ser
GCT
[ENA]
¡û
>WENV170994052
MWWD01004945
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
913
1003
+
Ser
GCT
[ENA]
¢þ
>W141734738
JNLX01000185
Bacteroidota
Hymenobacter sp. IS2118 [JNLX]
30898
30988
+
Ser
GCT
[ENA]
¡û
>SRA1003982
SRR002328.71442
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
283
193
-
Ser
GCT
[SRA]
>W1511582927
LATM01000001
Bacteroidota
Hymenobacter terrenus MIMtkLc17 [LATM]
709883
709793
-
Ser
GCT
[ENA]
¡û
>C161061552
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
3195709
3195799
+
Ser
GCT
[Ensembl]
¡û
>W1710573718
FOXS01000001
Bacteroidota
Hymenobacter arizonensis [FOXS]
408244
408334
+
Ser
GCT
[ENA]
¡û
Identical group No.37025 (1 seq.)
>SRA1003594
SRR002327.56441
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
181
270
+
Ser
GCT
[SRA]
Identical group No.37027 (1 seq.)
>SRA1003748
SRR002327.161434
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
113
203
+
Ser
GCT
[SRA]
Identical group No.52735 (4 seq.)
>SRA1003263
SRR002326.349951
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
185
96
-
Ser
GCT
[SRA]
>SRA1003380
SRR002326.424319
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
117
206
+
Ser
GCT
[SRA]
>SRA1003414
SRR002326.452468
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
185
96
-
Ser
GCT
[SRA]
>SRA1003761
SRR002327.168251
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
159
248
+
Ser
GCT
[SRA]
Identical group No.52753 (1 seq.)
>SRA1003246
SRR002326.337531
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
211
124
-
Ser
GCT
[SRA]
Identical group No.93359 (1 seq.)
>SRA1003298
SRR002326.370702
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
102
187
+
Ser
GCT
[SRA]
Identical group No.97223 (1 seq.)
>SRA1003553
SRR002327.25437
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
21
108
+
Ser
GCT
[SRA]
Identical group No.220687 (1 seq.)
>SRA1003209
SRR002326.307297
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
204
123
-
Ser
GCT
[SRA]
Identical group No.321121 (1 seq.)
>SRA1003394
SRR002326.434854
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
201
128
-
Ser
GCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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