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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
45 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170013081
ATLU01000001
339609
Alphaproteobacteria
GGT
Thr
>WENV170013082
ATLU01000001
307050
Alphaproteobacteria
GGC
Ala
>WENV170013083
ATLU01000001
147876
Alphaproteobacteria
TCT
Arg
>WENV170013084
ATLU01000001
59164
Alphaproteobacteria
GAG
Leu
>WENV170013086
ATLU01000001
338760
Alphaproteobacteria
GAA
Phe
>WENV170013088
ATLU01000003
284043
Alphaproteobacteria
CGT
Thr
>WENV170013089
ATLU01000003
148265
Alphaproteobacteria
CCT
Arg
>WENV170013090
ATLU01000003
237740
Alphaproteobacteria
TTT
Lys
>WENV170013093
ATLU01000008
147334
Alphaproteobacteria
CAT
Met
>WENV170013094
ATLU01000008
338282
Alphaproteobacteria
GTT
Asn
>WENV170013100
ATLU01000012
381459
Alphaproteobacteria
CAC
Val
>WENV170013101
ATLU01000012
254524
Alphaproteobacteria
TAC
Val
>WENV170013102
ATLU01000012
176908
Alphaproteobacteria
GTC
Asp
>WENV170013103
ATLU01000012
176908
Alphaproteobacteria
GTC
Asp
>WENV170013106
ATLU01000018
148200
Alphaproteobacteria
TGG
Pro
>WENV170013109
ATLU01000024
23672
Alphaproteobacteria
GCT
Ser
>WENV170013110
ATLU01000025
339606
Alphaproteobacteria
>WENV170013123
ATLU01000033
147334
Alphaproteobacteria
CAT
Met
>WENV170013124
ATLU01000033
338282
Alphaproteobacteria
GTT
Asn
>WENV170013125
ATLU01000033
113716
Alphaproteobacteria
CAA
Leu
>WENV170013130
ATLU01000048
23648
Alphaproteobacteria
CGA
Ser
>WENV170013134
ATLU01000052
163860
Alphaproteobacteria
GGG
Pro
>WENV170013138
ATLU01000054
113700
Alphaproteobacteria
>WENV170013154
ATLU01000087
338282
Alphaproteobacteria
GTT
Asn
>WENV170013168
ATLU01000150
237739
Alphaproteobacteria
CGT
Thr
>WENV170013180
ATLU01000196
147088
Alphaproteobacteria
CCT
Arg
>WENV170013184
ATLU01000222
236256
Alphaproteobacteria
TAC
Val
>WENV170013185
ATLU01000222
236256
Alphaproteobacteria
TAC
Val
>WENV170013192
ATLU01000256
113715
Alphaproteobacteria
TAG
Leu
>WENV170013198
ATLU01000306
338760
Alphaproteobacteria
GAA
Phe
>WENV170013214
ATLU01000503
25760
Alphaproteobacteria
CGA
Ser
>WENV170013222
ATLU01000618
113700
Alphaproteobacteria
>WENV170013225
ATLU01000659
236256
Alphaproteobacteria
TAC
Val
>WENV170013261
ATLU01001424
236256
Alphaproteobacteria
TAC
Val
>WENV170013277
ATLU01002200
147085
Alphaproteobacteria
CCG
Arg
>WENV170013282
ATLU01002698
147286
Alphaproteobacteria
CGG
Pro
>WENV170013283
ATLU01002780
23468
Alphaproteobacteria
GCT
Ser
>WENV170013285
ATLU01002861
28682
Alphaproteobacteria
GGA
Ser
>WENV170013288
ATLU01003036
27877
Alphaproteobacteria
GGA
Ser
>WENV170013315
ATLU01005249
381459
Alphaproteobacteria
CAC
Val
>WENV170013317
ATLU01005504
237739
Alphaproteobacteria
CGT
Thr
>WENV170013321
ATLU01005551
254387
Alphaproteobacteria
TTT
Lys
>WENV170013339
ATLU01006320
59164
Alphaproteobacteria
GAG
Leu
>WENV170013369
ATLU01008630
147089
Alphaproteobacteria
ACG
Arg
>WENV170013371
ATLU01009096
147083
Alphaproteobacteria
GGG
Pro
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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