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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
41 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170759526
LUMT01000002
338269
Alphaproteobacteria
GTT
Asn
>WENV170759685
LUMT01000165
412259
Alphaproteobacteria
CTG
Gln
>WENV170759569
LUMT01000013
237493
Alphaproteobacteria
CCA
Trp
>WENV170759557
LUMT01000007
412798
Alphaproteobacteria
CTG
Gln
>WENV170759521
LUMT01000002
24760
Alphaproteobacteria
TGA
Ser
>WENV170760515
LUMT01021195
147089
Alphaproteobacteria
ACG
Arg
>WENV170759623
LUMT01000042
412917
Alphaproteobacteria
TCC
Gly
>WENV170759539
LUMT01000003
237489
Alphaproteobacteria
CAT
Met
>WENV170759505
LUMT01000002
147152
Alphaproteobacteria
ACG
Arg
>WENV170760419
LUMT01014877
113700
Alphaproteobacteria
>WENV170759537
LUMT01000003
159305
Alphaproteobacteria
GTC
Asp
>WENV170759581
LUMT01000016
375044
Alphaproteobacteria
GCC
Gly
>WENV170759502
LUMT01000002
237197
Alphaproteobacteria
CCA
Trp
>WENV170759561
LUMT01000007
16408
Alphaproteobacteria
GGA
Ser
>WENV170759558
LUMT01000007
95928
Alphaproteobacteria
TAG
Leu
>WENV170759515
LUMT01000002
95928
Alphaproteobacteria
TAG
Leu
>WENV170760002
LUMT01001910
339454
Alphaproteobacteria
>WENV170759545
LUMT01000006
82652
Alphaproteobacteria
GTA
Tyr
>WENV170760667
LUMT01039366
345376
Alphaproteobacteria
GAC
Val
>WENV170759958
LUMT01001427
339722
Alphaproteobacteria
TTG
Gln
>WENV170760656
LUMT01037629
281594
Alphaproteobacteria
TGT
Thr
>WENV170760428
LUMT01015668
281594
Alphaproteobacteria
TGT
Thr
>WENV170759519
LUMT01000002
243803
Alphaproteobacteria
CAT
Met
>WENV170759512
LUMT01000002
412260
Alphaproteobacteria
TCC
Gly
>WENV170760432
LUMT01016033
339750
Alphaproteobacteria
GGT
Thr
>WENV170759544
LUMT01000006
258175
Alphaproteobacteria
CGC
Ala
>WENV170759547
LUMT01000006
167926
Alphaproteobacteria
CAT
Met
>WENV170759571
LUMT01000013
364533
Alphaproteobacteria
GCC
Gly
>WENV170759517
LUMT01000002
281959
Alphaproteobacteria
CGC
Ala
>WENV170759973
LUMT01001558
359842
Alphaproteobacteria
GAC
Val
>WENV170759550
LUMT01000006
152510
Alphaproteobacteria
GGG
Pro
>WENV170760404
LUMT01013958
241518
Alphaproteobacteria
CCA
Trp
>WENV170759504
LUMT01000002
342905
Alphaproteobacteria
GGT
Thr
>WENV170760454
LUMT01017404
369678
Alphaproteobacteria
GGT
Thr
>WENV170759622
LUMT01000042
369678
Alphaproteobacteria
GGT
Thr
>WENV170759506
LUMT01000002
95925
Alphaproteobacteria
CAA
Leu
>WENV170759531
LUMT01000003
29831
Alphaproteobacteria
TGA
Ser
>WENV170760361
LUMT01011487
412424
Alphaproteobacteria
TCC
Gly
>WENV170759523
LUMT01000002
59202
Alphaproteobacteria
TAA
Leu
>WENV170759530
LUMT01000003
191695
Alphaproteobacteria
CCT
Arg
>WENV170760112
LUMT01003673
147088
Alphaproteobacteria
CCT
Arg
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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