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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoproteota
Anticodon = TCT
HIT:
26 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236221 (2 seq.)
>A171000157
CP000852
Thermoproteota
Caldivirga maquilingensis IC-167 [CP000852]
1256393
1256469
+
Arg
TCT
-
¡û
>W1610000410
AAXQ01000001
Thermoproteota
Caldivirga maquilingensis IC-167 [AAXQ]
75841
75763
-
Arg
TCT
[ENA]
¡û
Identical group No.241093 (2 seq.)
>A171001517
CP002051
Thermoproteota
Staphylothermus hellenicus DSM 12710 [CP002051]
1335768
1335693
-
Arg
TCT
-
¡û
>W1610001718
ADGW01000003
Thermoproteota
Staphylothermus hellenicus DSM 12710 [ADGW]
191586
191661
+
Arg
TCT
[ENA]
¡û
Identical group No.241178 (6 seq.)
>A171001691
CP002100
Thermoproteota
Vulcanisaeta distributa DSM 14429 [CP002100]
1943172
1943247
+
Arg
TCT
-
¡û
>A171001972
CP002529
Thermoproteota
Vulcanisaeta moutnovskia 768-28 [CP002529]
456578
456655
+
Arg
TCT
-
¡û
>W1610024280
ATWG01000001
Thermoproteota
Stygiolobus azoricus DSM 6296 [ATWG]
161983
161906
-
Arg
TCT
[ENA]
¡û
>W1610047660
BBDM01000006
Thermoproteota
Vulcanisaeta sp. JCM 14467 [BBDM]
47754
47831
+
Arg
TCT
[ENA]
¡û
>W1610047684
BBDN01000004
Thermoproteota
Vulcanisaeta sp. JCM 16159 [BBDN]
76961
77038
+
Arg
TCT
[ENA]
¡û
>W1610047699
BBDO01000001
Thermoproteota
Vulcanisaeta sp. JCM 16161 [BBDO]
272699
272776
+
Arg
TCT
[ENA]
¡û
Identical group No.241272 (4 seq.)
>A179000280
CP002817
Thermoproteota
Sulfolobus acidocaldarius N8 [CP002817]
138804
138713
-
Arg
TCT
-
¡û
>A179000287
CP002818
Thermoproteota
Sulfolobus acidocaldarius Ron12/I [CP002818]
138804
138713
-
Arg
TCT
-
¡û
>A179000464
CP006977
Thermoproteota
Sulfolobus acidocaldarius SUSAZ [CP006977]
144080
143989
-
Arg
TCT
-
¡û
>At0444
CP000077
Thermoproteota
Sulfolobus acidocaldarius DSM 639 [CP000077]
138804
138713
-
Arg
TCT
[Ensembl]
¡û
Identical group No.241274 (1 seq.)
>A173000077
CP002590
Thermoproteota
Thermoproteus uzoniensis 768-20 [CP002590]
1308367
1308275
-
Arg
TCT
-
¡û
Identical group No.242114 (1 seq.)
>At0539
BA000023
Thermoproteota
Sulfurisphaera tokodaii str. 7 [BA000023]
2270483
2270573
+
Arg
TCT
[Ensembl]
¡û
Identical group No.242126 (16 seq.)
>A178000037
CP001399
Thermoproteota
Sulfolobus islandicus L.S.2.15 [CP001399]
1781283
1781373
+
Arg
TCT
-
¡û
>A178000047
CP001400
Thermoproteota
Sulfolobus islandicus M.14.25 [CP001400]
1677413
1677503
+
Arg
TCT
-
¡û
>A178000057
CP001401
Thermoproteota
Sulfolobus islandicus M.16.27 [CP001401]
1803311
1803401
+
Arg
TCT
-
¡û
>A178000067
CP001402
Thermoproteota
Sulfolobus islandicus M.16.4 [CP001402]
1703543
1703633
+
Arg
TCT
-
¡û
>A178000077
CP001403
Thermoproteota
Sulfolobus islandicus Y.G.57.14 [CP001403]
1735416
1735506
+
Arg
TCT
-
¡û
>A178000086
CP001404
Thermoproteota
Sulfolobus islandicus Y.N.15.51 [CP001404]
891207
891117
-
Arg
TCT
-
¡û
>A178000107
CP001800
Thermoproteota
Saccharolobus solfataricus [CP001800]
1176365
1176275
-
Arg
TCT
-
¡û
>A178000191
CP002425
Thermoproteota
Sulfolobus islandicus REY15A [CP002425]
1583141
1583231
+
Arg
TCT
-
¡û
>A178000201
CP002426
Thermoproteota
Sulfolobus islandicus HVE10/4 [CP002426]
1727625
1727715
+
Arg
TCT
-
¡û
>A178000356
CP003928
Thermoproteota
Sulfolobus islandicus LAL14/1 [CP003928]
1568617
1568707
+
Arg
TCT
-
¡û
>A178000528
CP011055
Thermoproteota
Saccharolobus solfataricus SARC-B [CP011055]
1234528
1234438
-
Arg
TCT
-
¡û
>A178000538
CP011056
Thermoproteota
Saccharolobus solfataricus SARC-C [CP011056]
1234531
1234441
-
Arg
TCT
-
¡û
>A178000548
CP011057
Thermoproteota
Saccharolobus solfataricus SULA [CP011057]
1234555
1234465
-
Arg
TCT
-
¡û
>A178000745
LT549890
Thermoproteota
Saccharolobus solfataricus P1 [LT549890]
250051
249961
-
Arg
TCT
-
¡û
>A179000662
CP017006
Thermoproteota
Sulfolobus sp. A20 [CP017006]
796896
796984
+
Arg
TCT
-
¡û
>At0498
AE006641
Thermoproteota
Saccharolobus solfataricus P2 [AE006641]
249085
248996
-
Arg
TCT
[Ensembl]
¡û
Identical group No.242936 (8 seq.)
>A171000364
CP001140
Thermoproteota
Desulfurococcus amylolyticus 1221n [CP001140]
1030636
1030560
-
Arg
TCT
-
¡û
>A171001842
CP002363
Thermoproteota
Desulfurococcus mucosus DSM 2162 [CP002363]
1076410
1076335
-
Arg
TCT
-
¡û
>A171002978
CP003321
Thermoproteota
Desulfurococcus amylolyticus DSM 16532 [CP003321]
1148553
1148477
-
Arg
TCT
-
¡û
>A171003229
CP003531
Thermoproteota
Thermogladius calderae 1633 [CP003531]
361458
361533
+
Arg
TCT
-
¡û
>WENV181229306
OFEJ01003893
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
79
4
-
Arg
TCT
[ENA]
¢þ
>W1910003079
AUQX01000004
Thermoproteota
Desulfurococcus mucosus DSM 2161 [AUQX]
42272
42197
-
Arg
TCT
[ENA]
¡û
>W1610004215
AGIW01000001
Thermoproteota
Desulfurococcus amylolyticus DSM 16532 [AGIW]
1345882
1345959
+
Arg
TCT
[ENA]
¡û
>W1610040472
AZUU01000002
Thermoproteota
Desulfurococcus amylolyticus Z-533 [AZUU]
621157
621080
-
Arg
TCT
[ENA]
¡û
Identical group No.244814 (1 seq.)
>A171001675
CP002098
Thermoproteota
Ignisphaera aggregans DSM 17230 [CP002098]
1082236
1082159
-
Arg
TCT
-
¡û
Identical group No.244880 (2 seq.)
>A178000008
AP012489
Thermoproteota
Aeropyrum camini SY1 = JCM 12091 [AP012489]
959991
960112
+
Arg
TCT
-
¡û
>At0011
BA000002
Thermoproteota
Aeropyrum pernix K1 [BA000002]
1011525
1011646
+
Arg
TCT
[Ensembl]
¡û
Identical group No.244906 (7 seq.)
>A179000259
CP002656
Thermoproteota
Metallosphaera cuprina Ar-4 [CP002656]
378092
378181
+
Arg
TCT
-
¡û
>A179000611
CP012172
Thermoproteota
Metallosphaera sedula ARS50-1 [CP012172]
1806905
1806818
-
Arg
TCT
-
¡û
>A179000616
CP012173
Thermoproteota
Metallosphaera sedula ARS50-2 [CP012173]
1806901
1806814
-
Arg
TCT
-
¡û
>A179000621
CP012174
Thermoproteota
Metallosphaera sedula ARS120-1 [CP012174]
1806903
1806816
-
Arg
TCT
-
¡û
>A179000626
CP012175
Thermoproteota
Metallosphaera sedula ARS120-2 [CP012175]
1806905
1806818
-
Arg
TCT
-
¡û
>A179000631
CP012176
Thermoproteota
Metallosphaera sedula SARC-M1 [CP012176]
1806905
1806818
-
Arg
TCT
-
¡û
>At0180
CP000682
Thermoproteota
Metallosphaera sedula DSM 5348 [CP000682]
1806889
1806802
-
Arg
TCT
[Ensembl]
¡û
Identical group No.245503 (11 seq.)
>A171002952
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
1705979
1705902
-
Arg
TCT
-
¡û
>A171002953
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
1684803
1684726
-
Arg
TCT
-
¡û
>A179000314
CP003098
Thermoproteota
Pyrobaculum ferrireducens 1860 [CP003098]
2267674
2267765
+
Arg
TCT
-
¡û
>WENV180014092
FPIC01051740
[FPIC] soil metagenome; Soil
7715
7792
+
Arg
TCT
[ENA]
¢þ
>At0220
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
842404
842327
-
Arg
TCT
[Ensembl]
¡û
>At0251
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
372012
371935
-
Arg
TCT
[Ensembl]
¡û
>At0299
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
1327527
1327620
+
Arg
TCT
[Ensembl]
¡û
>At0343
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
1424981
1425078
+
Arg
TCT
[Ensembl]
¡û
>WENV170574218
FLYM01014615
[FLYM] hot springs metagenome; Sediment
1319
1242
-
Arg
TCT
[ENA]
¢þ
>W1911075115
NMUE01000015
Thermoproteota
Pyrobaculum aerophilum YKB31 [NMUE]
34019
34096
+
Arg
TCT
[ENA]
¡û
>W1911075155
NMUF01000076
Thermoproteota
Pyrobaculum aerophilum YKB32 [NMUF]
3552
3629
+
Arg
TCT
[ENA]
¡û
Identical group No.252468 (3 seq.)
>A171002001
CP002535
Thermoproteota
Acidianus hospitalis W1 [CP002535]
1115917
1115994
+
Arg
TCT
-
¡û
>WENV181406907
OGCG01002447
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
7422
7499
+
Arg
TCT
[ENA]
¢þ
>W1911654368
QEFD01000230
Thermoproteota
Acidianus hospitalis [QEFD]
4461
4538
+
Arg
TCT
[ENA]
¡û
Identical group No.252763 (1 seq.)
>A178000340
CP003423
Thermoproteota
Fervidicoccus fontis Kam940 [CP003423]
1218000
1218107
+
Arg
TCT
-
¡û
Identical group No.252769 (1 seq.)
>A179000688
CP020477
Thermoproteota
Acidianus manzaensis YN-25 [CP020477]
2011240
2011333
+
Arg
TCT
-
¡û
Identical group No.256452 (5 seq.)
>A171002422
CP002838
Thermoproteota
Pyrolobus fumarii 1A [CP002838]
1033566
1033643
+
Arg
TCT
-
¡û
>A171006447
CP013011
Thermoproteota
Pyrodictium delaneyi Su06 [CP013011]
460231
460154
-
Arg
TCT
-
¡û
>At0116
CP000493
Thermoproteota
Hyperthermus butylicus DSM 5456 [CP000493]
1612557
1612634
+
Arg
TCT
[Ensembl]
¡û
>W1910870022
NCQP01000007
Thermoproteota
Pyrodictium delaneyi Hulk [NCQP]
122471
122394
-
Arg
TCT
[ENA]
¡û
>W1610772516
LNTB01000001
Thermoproteota
Pyrodictium occultum PL-19 [LNTB]
412536
412459
-
Arg
TCT
[ENA]
¡û
Identical group No.259892 (2 seq.)
>A179000133
CP001939
Thermoproteota
Thermosphaera aggregans DSM 11486 [CP001939]
892716
892626
-
Arg
TCT
-
¡û
>A172000012
CP001939
Thermoproteota
Thermosphaera aggregans DSM 11486 [CP001939]
892716
892626
-
Arg
TCT
-
¡û
Identical group No.261144 (2 seq.)
>A179000706
FN869859
Thermoproteota
Thermoproteus tenax Kra 1 [FN869859]
1728492
1728399
-
Arg
TCT
-
¡û
>A172000057
FN869859
Thermoproteota
Thermoproteus tenax Kra 1 [FN869859]
1728492
1728399
-
Arg
TCT
-
¡û
Identical group No.261588 (1 seq.)
>At2204
CP000816
Thermoproteota
Ignicoccus hospitalis KIN4/I [CP000816]
498947
499024
+
Arg
TCT
[Ensembl]
¡û
Identical group No.261603 (1 seq.)
>At0396
CP000575
Thermoproteota
Staphylothermus marinus F1 [CP000575]
1056248
1056322
+
Arg
TCT
[Ensembl]
¡û
Identical group No.262408 (2 seq.)
>A179000451
CP006867
Thermoproteota
Ignicoccus islandicus DSM 13165 [CP006867]
410664
410567
-
Arg
TCT
-
¡û
>A172000035
CP006867
Thermoproteota
Ignicoccus islandicus DSM 13165 [CP006867]
410664
410570
-
Arg
TCT
-
¡û
Identical group No.265382 (1 seq.)
>A173000030
CP001742
Thermoproteota
Acidilobus saccharovorans 345-15 [CP001742]
249288
249363
+
Arg
TCT
-
¡û
Identical group No.269536 (1 seq.)
>A173000104
CP003378
Thermoproteota
Caldisphaera lagunensis DSM 15908 [CP003378]
1297697
1297620
-
Arg
TCT
-
¡û
Identical group No.322047 (4 seq.)
>A179000433
CP006646
Thermoproteota
Thermofilum adornatum 1910b [CP006646]
618553
618665
+
Arg
TCT
-
¡û
>A179000482
CP007493
Thermoproteota
Thermofilum adornatum 1505 [CP007493]
1572565
1572677
+
Arg
TCT
-
¡û
>A17A001067
CP006646
Thermoproteota
Thermofilum adornatum 1910b [CP006646]
618553
618662
+
Arg
TCT
-
¡û
>A17A001191
CP007493
Thermoproteota
Thermofilum adornatum 1505 [CP007493]
1572565
1572674
+
Arg
TCT
-
¡û
Identical group No.372677 (1 seq.)
>A179000545
CP009961
Thermoproteota
Infirmifilum uzonense 1807-2 [CP009961]
1341704
1341594
-
Arg
TCT
-
¡û
Identical group No.402174 (1 seq.)
>At0573
CP000505
Thermoproteota
Thermofilum pendens Hrk 5 [CP000505]
477850
477946
+
Arg
TCT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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