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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
53 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170683859
LFRM01008302
146807
Gammaproteobacteria
TCT
Arg
>WENV170684284
LFRM01030485
58768
Gammaproteobacteria
CAA
Leu
>WENV170684434
LFRM01038886
46594
Gammaproteobacteria
GGA
Ser
>WENV170684651
LFRM01050986
411651
Gammaproteobacteria
GCA
Cys
>WENV170684873
LFRM01062457
411651
Gammaproteobacteria
GCA
Cys
>WENV170684960
LFRM01065834
235512
Gammaproteobacteria
GGT
Thr
>WENV170685053
LFRM01071069
426403
Gammaproteobacteria
GCA
Cys
>WENV170685066
LFRM01071406
144981
Gammaproteobacteria
CCG
Arg
>WENV170685192
LFRM01077556
145000
Gammaproteobacteria
GTC
Asp
>WENV170685337
LFRM01085290
243485
Gammaproteobacteria
TGT
Thr
>WENV170685342
LFRM01085719
44888
Gammaproteobacteria
TGA
Ser
>WENV170685462
LFRM01092749
16238
Gammaproteobacteria
CGA
Ser
>WENV170685606
LFRM01100372
145000
Gammaproteobacteria
GTC
Asp
>WENV170685700
LFRM01104860
339913
Gammaproteobacteria
TTT
Lys
>WENV170685774
LFRM01108212
23397
Gammaproteobacteria
GGA
Ser
>WENV170685829
LFRM01110889
280036
Gammaproteobacteria
TTT
Lys
>WENV170685929
LFRM01116352
144995
Gammaproteobacteria
GAT
Ile
>WENV170685938
LFRM01116650
235516
Gammaproteobacteria
GTG
His
>WENV170685978
LFRM01118913
58768
Gammaproteobacteria
CAA
Leu
>WENV170686185
LFRM01130443
411651
Gammaproteobacteria
GCA
Cys
>WENV170686340
LFRM01139771
339913
Gammaproteobacteria
TTT
Lys
>WENV170686383
LFRM01141117
338353
Gammaproteobacteria
TTT
Lys
>WENV170686603
LFRM01153888
280036
Gammaproteobacteria
TTT
Lys
>WENV170686807
LFRM01164417
243485
Gammaproteobacteria
TGT
Thr
>WENV170686974
LFRM01171098
145334
Gammaproteobacteria
CCG
Arg
>WENV170687441
LFRM01193015
145000
Gammaproteobacteria
GTC
Asp
>WENV170687675
LFRM01204984
58768
Gammaproteobacteria
CAA
Leu
>WENV170687877
LFRM01214774
266766
Gammaproteobacteria
TGT
Thr
>WENV170687891
LFRM01215768
145237
Gammaproteobacteria
CAT
Met
>WENV170688162
LFRM01231417
145489
Gammaproteobacteria
GAT
Ile
>WENV170688163
LFRM01231417
236029
Gammaproteobacteria
TGC
Ala
>WENV170688181
LFRM01232449
235512
Gammaproteobacteria
GGT
Thr
>WENV170688373
LFRM01242042
58768
Gammaproteobacteria
CAA
Leu
>WENV170688398
LFRM01242971
341109
Gammaproteobacteria
TCC
Gly
>WENV170688740
LFRM01260037
145237
Gammaproteobacteria
CAT
Met
>WENV170688959
LFRM01270087
145334
Gammaproteobacteria
CCG
Arg
>WENV170689084
LFRM01276184
145000
Gammaproteobacteria
GTC
Asp
>WENV170689208
LFRM01283025
145000
Gammaproteobacteria
GTC
Asp
>WENV170689308
LFRM01288383
144995
Gammaproteobacteria
GAT
Ile
>WENV170689321
LFRM01288753
145000
Gammaproteobacteria
GTC
Asp
>WENV170689496
LFRM01297151
186449
Gammaproteobacteria
TGG
Pro
>WENV170689915
LFRM01317664
412442
Gammaproteobacteria
GCA
Cys
>WENV170689929
LFRM01318292
144954
Gammaproteobacteria
ACG
Arg
>WENV170690157
LFRM01327619
144995
Gammaproteobacteria
GAT
Ile
>WENV170690158
LFRM01327619
279906
Gammaproteobacteria
TGC
Ala
>WENV170690355
LFRM01336967
339913
Gammaproteobacteria
TTT
Lys
>WENV170690420
LFRM01340838
23442
Gammaproteobacteria
GCT
Ser
>WENV170690421
LFRM01340838
145485
Gammaproteobacteria
ACG
Arg
>WENV170690790
LFRM01361603
145000
Gammaproteobacteria
GTC
Asp
>WENV170691011
LFRM01375088
65265
Gammaproteobacteria
CAG
Leu
>WENV170691012
LFRM01375088
58767
Gammaproteobacteria
CAG
Leu
>WENV170691413
LFRM01396409
339913
Gammaproteobacteria
TTT
Lys
>WENV170691518
LFRM01400862
58768
Gammaproteobacteria
CAA
Leu
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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