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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
83 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1016083
SRR023846.341737
113638
Alphaproteobacteria
GAG
Leu
>SRA1016231
SRR023846.410173
16380
Alphaproteobacteria
GCT
Ser
>SRA1015844
SRR023846.224748
151925
Alphaproteobacteria
CGG
Pro
>SRA1015851
SRR023846.227895
109113
Alphaproteobacteria
CAG
Leu
>SRA1015391
SRR023846.40264
379822
Alphaproteobacteria
TTC
Glu
>SRA1015580
SRR023846.117646
379822
Alphaproteobacteria
TTC
Glu
>SRA1015955
SRR023846.282969
379822
Alphaproteobacteria
TTC
Glu
>SRA1016115
SRR023846.353221
379822
Alphaproteobacteria
TTC
Glu
>SRA1015725
SRR023846.173010
237580
Alphaproteobacteria
CGC
Ala
>SRA1015918
SRR023846.260340
237580
Alphaproteobacteria
CGC
Ala
>SRA1016249
SRR023846.418097
237580
Alphaproteobacteria
CGC
Ala
>SRA1015543
SRR023846.105114
148427
Alphaproteobacteria
TAC
Val
>SRA1016502
SRR023846.534024
148427
Alphaproteobacteria
TAC
Val
>SRA1016228
SRR023846.409399
289655
Alphaproteobacteria
GGC
Ala
>SRA1016400
SRR023846.479835
289655
Alphaproteobacteria
GGC
Ala
>SRA1016276
SRR023846.431452
75256
Alphaproteobacteria
CAG
Leu
>SRA1015654
SRR023846.146237
7609
Alphaproteobacteria
GCT
Ser
>SRA1015384
SRR023846.38383
8002
Alphaproteobacteria
GCT
Ser
>SRA1016530
SRR023846.544874
96640
Alphaproteobacteria
CAA
Leu
>SRA1015292
SRR023846.1653
247477
Alphaproteobacteria
GTT
Asn
>SRA1015942
SRR023846.274914
247477
Alphaproteobacteria
GTT
Asn
>SRA1016192
SRR023846.392926
247477
Alphaproteobacteria
GTT
Asn
>SRA1016354
SRR023846.461743
247477
Alphaproteobacteria
GTT
Asn
>SRA1015473
SRR023846.77108
162524
Alphaproteobacteria
ACG
Arg
>SRA1015577
SRR023846.117294
162524
Alphaproteobacteria
ACG
Arg
>SRA1015934
SRR023846.269920
162524
Alphaproteobacteria
ACG
Arg
>SRA1016100
SRR023846.349637
162524
Alphaproteobacteria
ACG
Arg
>SRA1016343
SRR023846.459966
162524
Alphaproteobacteria
ACG
Arg
>SRA1016344
SRR023846.460208
162524
Alphaproteobacteria
ACG
Arg
>SRA1016446
SRR023846.499849
162524
Alphaproteobacteria
ACG
Arg
>SRA1016168
SRR023846.377396
144964
Alphaproteobacteria
TGG
Pro
>SRA1016125
SRR023846.356923
243633
Alphaproteobacteria
CGT
Thr
>SRA1015704
SRR023846.165885
236134
Alphaproteobacteria
TAC
Val
>SRA1015874
SRR023846.236775
236134
Alphaproteobacteria
TAC
Val
>SRA1016299
SRR023846.439779
236134
Alphaproteobacteria
TAC
Val
>SRA1015400
SRR023846.44899
412181
Alphaproteobacteria
CTG
Gln
>SRA1015468
SRR023846.71578
412181
Alphaproteobacteria
CTG
Gln
>SRA1015511
SRR023846.89834
412181
Alphaproteobacteria
CTG
Gln
>SRA1015758
SRR023846.183816
412181
Alphaproteobacteria
CTG
Gln
>SRA1015873
SRR023846.236256
412181
Alphaproteobacteria
CTG
Gln
>SRA1016010
SRR023846.311520
412181
Alphaproteobacteria
CTG
Gln
>SRA1016191
SRR023846.392709
412181
Alphaproteobacteria
CTG
Gln
>SRA1015632
SRR023846.138596
294221
Alphaproteobacteria
GAA
Phe
>SRA1015807
SRR023846.207793
294221
Alphaproteobacteria
GAA
Phe
>SRA1016419
SRR023846.488727
294221
Alphaproteobacteria
GAA
Phe
>SRA1015450
SRR023846.63017
237579
Alphaproteobacteria
CTT
Lys
>SRA1015769
SRR023846.192203
237579
Alphaproteobacteria
CTT
Lys
>SRA1016185
SRR023846.387284
237579
Alphaproteobacteria
CTT
Lys
>SRA1016245
SRR023846.416888
237579
Alphaproteobacteria
CTT
Lys
>SRA1016361
SRR023846.465912
237579
Alphaproteobacteria
CTT
Lys
>SRA1015682
SRR023846.157732
108283
Alphaproteobacteria
CAA
Leu
>SRA1015822
SRR023846.212004
30071
Alphaproteobacteria
CGA
Ser
>SRA1016286
SRR023846.436351
30071
Alphaproteobacteria
CGA
Ser
>SRA1015924
SRR023846.264539
436809
Alphaproteobacteria
CTG
Gln
>SRA1016040
SRR023846.320228
339465
Alphaproteobacteria
GGT
Thr
>SRA1015465
SRR023846.70180
248021
Alphaproteobacteria
CTT
Lys
>SRA1016334
SRR023846.456861
238733
Alphaproteobacteria
CCA
Trp
>SRA1016459
SRR023846.508664
238733
Alphaproteobacteria
CCA
Trp
>SRA1015780
SRR023846.197294
184120
Alphaproteobacteria
GTG
His
>SRA1015854
SRR023846.230264
184120
Alphaproteobacteria
GTG
His
>SRA1015900
SRR023846.248361
184120
Alphaproteobacteria
GTG
His
>SRA1016486
SRR023846.526333
184120
Alphaproteobacteria
GTG
His
>SRA1016071
SRR023846.337316
339516
Alphaproteobacteria
CAC
Val
>SRA1015979
SRR023846.292388
239095
Alphaproteobacteria
TGT
Thr
>SRA1015334
SRR023846.21787
339486
Alphaproteobacteria
CCC
Gly
>SRA1015894
SRR023846.246944
23789
Alphaproteobacteria
TGA
Ser
>SRA1016222
SRR023846.407411
23789
Alphaproteobacteria
TGA
Ser
>SRA1015546
SRR023846.106576
237574
Alphaproteobacteria
TGT
Thr
>SRA1015787
SRR023846.200785
237574
Alphaproteobacteria
TGT
Thr
>SRA1016076
SRR023846.338781
237574
Alphaproteobacteria
TGT
Thr
>SRA1016151
SRR023846.371463
237574
Alphaproteobacteria
TGT
Thr
>SRA1015526
SRR023846.97550
22312
Alphaproteobacteria
GCT
Ser
>SRA1016005
SRR023846.305932
22312
Alphaproteobacteria
GCT
Ser
>SRA1016103
SRR023846.349894
22312
Alphaproteobacteria
GCT
Ser
>SRA1016553
SRR023846.560952
22312
Alphaproteobacteria
GCT
Ser
>SRA1015533
SRR023846.101278
339454
Alphaproteobacteria
>SRA1016422
SRR023846.489436
339454
Alphaproteobacteria
>SRA1015740
SRR023846.177278
417658
Alphaproteobacteria
TCC
Gly
>SRA1016167
SRR023846.377201
417658
Alphaproteobacteria
TCC
Gly
>SRA1016173
SRR023846.378591
417658
Alphaproteobacteria
TCC
Gly
>SRA1016174
SRR023846.379156
417658
Alphaproteobacteria
TCC
Gly
>SRA1016258
SRR023846.422948
417658
Alphaproteobacteria
TCC
Gly
>SRA1016531
SRR023846.545059
417658
Alphaproteobacteria
TCC
Gly
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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