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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = TCA
HIT:
60 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.52 (2 seq.)
>W1660001488
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
877290
877386
+
SeC(p)
TCA
[ENA]
¡û
>W1760000789
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
877290
877386
+
SeC(p)
TCA
[ENA]
¡û
Identical group No.169 (1 seq.)
>C211196938
CP064972
Acidobacteriota
Holophagales bacterium [CP064972]
4847325
4847226
-
SeC
TCA
-
¡û
Identical group No.260 (6 seq.)
>W1910697279
MEKM01000077
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_01_FULL_67_28 [MEKM]
6273
6173
-
Sec
TCA
[ENA]
¡û
>W1910697295
MEKN01000028
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57 [MEKN]
2443
2343
-
Sec
TCA
[ENA]
¡û
>W1910697329
MEKO01000102
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_12_FULL_67_30 [MEKO]
5963
5863
-
Sec
TCA
[ENA]
¡û
>W2010830704
MEKM01000077
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_01_FULL_67_28 [MEKM]
6273
6173
-
SeC
TCA
[ENA]
¡û
>W2010830720
MEKN01000028
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57 [MEKN]
2443
2343
-
SeC
TCA
[ENA]
¡û
>W2010830754
MEKO01000102
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_12_FULL_67_30 [MEKO]
5963
5863
-
SeC
TCA
[ENA]
¡û
Identical group No.261 (4 seq.)
>W1910697565
MEKV01000107
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_36 [MEKV]
96993
97091
+
Sec
TCA
[ENA]
¡û
>W1910697781
MELC01000036
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 [MELC]
220901
220999
+
Sec
TCA
[ENA]
¡û
>W2010830990
MEKV01000107
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_36 [MEKV]
96993
97091
+
SeC
TCA
[ENA]
¡û
>W2010831206
MELC01000036
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 [MELC]
220901
220999
+
SeC
TCA
[ENA]
¡û
Identical group No.265 (1 seq.)
>W131237256
AUNQ01000144
Acidobacteriota
Acidobacteria bacterium JGI 0001001-H03 [AUNQ]
11431
11333
-
SeC(p)
TCA
[ENA]
¡û
Identical group No.335 (3 seq.)
>W1720002998
MNDE01000054
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_17 [MNDE]
21407
21309
-
SeC
TCA
[ENA]
¡û
>W1720003001
MNEB01000062
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_57_12 [MNEB]
28543
28445
-
SeC
TCA
[ENA]
¡û
>W1720003017
MNJF01000159
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_4_57_11 [MNJF]
2115
2213
+
SeC
TCA
[ENA]
¡û
Identical group No.336 (1 seq.)
>W1720003019
MNJR01000093
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
58948
58850
-
SeC
TCA
[ENA]
¡û
Identical group No.389 (1 seq.)
>W1711573884
MNEA01000140
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_57_6 [MNEA]
1562
1464
-
SeC(p)
TCA
[ENA]
¡û
Identical group No.442 (2 seq.)
>W1720003012
MNHV01000134
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_60_7 [MNHV]
6420
6518
+
SeC
TCA
[ENA]
¡û
>W1720003020
MNKN01000142
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_60_10 [MNKN]
7786
7884
+
SeC
TCA
[ENA]
¡û
Identical group No.502 (1 seq.)
>W2110093338
CAJCHQ010000578
Acidobacteriota
Bryobacterales bacterium [CAJCHQ]
1294
1390
+
SeC
TCA
[ENA]
¡û
Identical group No.505 (1 seq.)
>W1711573396
MNDC01000031
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_58_27 [MNDC]
23413
23511
+
SeC(p)
TCA
[ENA]
¡û
Identical group No.507 (1 seq.)
>C211198107
CP065003
Acidobacteriota
Acidobacteria bacterium [CP065003]
2549027
2548929
-
SeC
TCA
-
¡û
Identical group No.596 (1 seq.)
>W2110094171
CAJCIT010000081
Acidobacteriota
Acidobacteriaceae bacterium [CAJCIT]
4252
4154
-
SeC
TCA
[ENA]
¡û
Identical group No.611 (1 seq.)
>C213002809
CP065005
Acidobacteriota
Acidobacteria bacterium [CP065005]
3079556
3079654
+
SeC
TCA
-
¡û
Identical group No.659 (1 seq.)
>W141696014
JMFG01000007
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
6067
6162
+
SeC(p)
TCA
[ENA]
¡û
Identical group No.834 (6 seq.)
>C213004786
CP072636
Acidobacteriota
Chloracidobacterium sp. 2 [CP072636, CP072637]
2506914
2507010
+
SeC
TCA
-
¡û
>C213004788
CP072638
Acidobacteriota
Chloracidobacterium sp. S [CP072638, CP072639]
1573121
1573025
-
SeC
TCA
-
¡û
>C213004789
CP072640
Acidobacteriota
Chloracidobacterium sp. A [CP072640, CP072641]
1363530
1363434
-
SeC
TCA
-
¡û
>C213004790
CP072642
Acidobacteriota
Chloracidobacterium sp. N [CP072642, CP072643]
1572069
1571973
-
SeC
TCA
-
¡û
>C213004791
CP072644
Acidobacteriota
Chloracidobacterium sp. E [CP072644, CP072645]
1788850
1788754
-
SeC
TCA
-
¡û
>C213004792
CP072646
Acidobacteriota
Chloracidobacterium sp. MS 40/45 [CP072646, CP072647]
1576563
1576467
-
SeC
TCA
-
¡û
Identical group No.841 (2 seq.)
>W1910697350
MEKP01000277
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13 [MEKP]
6738
6835
+
Sec
TCA
[ENA]
¡û
>W2010830775
MEKP01000277
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13 [MEKP]
6738
6835
+
SeC
TCA
[ENA]
¡û
Identical group No.1200 (1 seq.)
>W1711573494
MNDG01000101
Acidobacteriota
Acidobacteriales bacterium 13_2_20CM_55_8 [MNDG]
10922
10825
-
SeC(p)
TCA
[ENA]
¡û
Identical group No.1247 (2 seq.)
>W1910697774
MELB01000160
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_10 [MELB]
3038
3135
+
Sec
TCA
[ENA]
¡û
>W2010831199
MELB01000160
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_10 [MELB]
3038
3135
+
SeC
TCA
[ENA]
¡û
Identical group No.1423 (5 seq.)
>W1720003006
MNEY01000158
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_56_16 [MNEY]
22573
22476
-
SeC
TCA
[ENA]
¡û
>W1720003011
MNGU01000149
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_56_11 [MNGU]
7605
7702
+
SeC
TCA
[ENA]
¡û
>W1720003013
MNHW01000053
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_56_5 [MNHW]
11297
11200
-
SeC
TCA
[ENA]
¡û
>W1720003014
MNHX01000143
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_56_11 [MNHX]
8703
8606
-
SeC
TCA
[ENA]
¡û
>W1720003021
MNKP01000177
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_55_15 [MNKP]
6241
6144
-
SeC
TCA
[ENA]
¡û
Identical group No.1554 (1 seq.)
>C211000352
AP017470
Acidobacteriota
Thermotomaculum hydrothermale AC55 [AP017470]
1569020
1569117
+
SeC
TCA
-
¡û
Identical group No.1577 (1 seq.)
>C213004793
CP072648
Acidobacteriota
Chloracidobacterium sp. BV2-C [CP072648, CP072649]
1085014
1085110
+
SeC
TCA
-
¡û
Identical group No.1579 (2 seq.)
>W1910697364
MEKQ01000039
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_60_20 [MEKQ]
7660
7563
-
Sec
TCA
[ENA]
¡û
>W2010830789
MEKQ01000039
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_60_20 [MEKQ]
7660
7563
-
SeC
TCA
[ENA]
¡û
Identical group No.1766 (2 seq.)
>W1930012639
MEKZ01000427
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22 [MEKZ]
10244
10147
-
SeC
TCA
[ENA]
¡û
>W2030018717
MEKZ01000427
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22 [MEKZ]
10244
10147
-
SeC
TCA
[ENA]
¡û
Identical group No.1788 (1 seq.)
>W2110520536
JAFREP010000003
Acidobacteriota
Acanthopleuribacter pedis KCTC 12899 [JAFREP]
268202
268299
+
SeC
TCA
[ENA]
¡û
Identical group No.1817 (1 seq.)
>C161037459
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
1275848
1275945
+
SeC(p)
TCA
-
¡û
Identical group No.2320 (4 seq.)
>W1910697499
MEKU01000010
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 [MEKU]
32919
33015
+
Sec
TCA
[ENA]
¡û
>W1910697855
MELD01000141
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14 [MELD]
30022
30118
+
Sec
TCA
[ENA]
¡û
>W2010830924
MEKU01000010
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 [MEKU]
32919
33015
+
SeC
TCA
[ENA]
¡û
>W2010831280
MELD01000141
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14 [MELD]
30022
30118
+
SeC
TCA
[ENA]
¡û
Identical group No.2658 (4 seq.)
>W1720003000
MNDZ01000129
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_66_4 [MNDZ]
4528
4432
-
SeC
TCA
[ENA]
¡û
>W1720003005
MNEX01000129
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_65_14 [MNEX]
10742
10838
+
SeC
TCA
[ENA]
¡û
>W1720003007
MNFU01000001
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_65_8 [MNFU]
20058
19962
-
SeC
TCA
[ENA]
¡û
>W1720003010
MNGT01000243
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_65_5 [MNGT]
8198
8294
+
SeC
TCA
[ENA]
¡û
Identical group No.3674 (1 seq.)
>C211295881
CP071793
Acidobacteriota
Acanthopleuribacteraceae bacterium M133 [CP071793]
9768281
9768185
-
SeC
TCA
-
¡û
Identical group No.3691 (1 seq.)
>C028551
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
1226070
1225977
-
SeC
TCA
[Ensembl]
¡û
Identical group No.4545 (1 seq.)
>C161083720
CP015136
Acidobacteriota
Luteitalea pratensis DSM 100886; HEG_-6_39 [CP015136]
6873294
6873199
-
SeC(p)
TCA
-
¡û
Identical group No.4596 (2 seq.)
>W1910697412
MEKR01000197
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 [MEKR]
6048
5953
-
Sec
TCA
[ENA]
¡û
>W2010830837
MEKR01000197
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 [MEKR]
6048
5953
-
SeC
TCA
[ENA]
¡û
Identical group No.5260 (1 seq.)
>W2130007076
CAJCHX010000618
Acidobacteriota
Acidobacteriaceae bacterium [CAJCHX]
551
646
+
SeC
TCA
[ENA]
¡û
Identical group No.6725 (1 seq.)
>C231004539
AP024452
Acidobacteriota
Luteitalea sp. TBR-22 [AP024452]
5775846
5775751
-
SeC
TCA
-
¡û
Identical group No.7097 (1 seq.)
>W1810047026
OKRG01000094
Acidobacteriota
Acidobacteriia bacterium SbA2 SbA2 Peat soil MAG SbA2 [OKRG]
1529
1623
+
Sec
TCA
[ENA]
¡û
Identical group No.7098 (1 seq.)
>W1810047232
OMOG01000267
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
9352
9258
-
Sec
TCA
[ENA]
¡û
Identical group No.7255 (1 seq.)
>W2010363407
CADDZJ010000105
Acidobacteriota
Acidobacteria bacterium [CADDZJ]
6198
6292
+
SeC
TCA
[ENA]
¡û
Identical group No.7297 (1 seq.)
>W2010698558
JACHEK010000002
Acidobacteriota
Silvibacterium bohemicum DSM 103733 [JACHEK]
339219
339125
-
SeC
TCA
[ENA]
¡û
Identical group No.7670 (1 seq.)
>W131179260
ARMF01000009
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1072307
1072401
+
SeC(p)
TCA
[ENA]
¡û
Identical group No.8274 (1 seq.)
>W1810047034
OKRH01000065
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA6 SbA6 Peat soil MAG SbA6 [OKRH]
244
338
+
Sec
TCA
[ENA]
¡û
Identical group No.8402 (1 seq.)
>W1711391190
MEKK01000153
Acidobacteriota
Acidobacteria bacterium RBG_16_68_9 [MEKK]
4746
4840
+
SeC(p)
TCA
[ENA]
¡û
Identical group No.8562 (1 seq.)
>W2010781874
LMUT01000002
Acidobacteriota
Granulicella sp. L46 [LMUT]
84950
84856
-
SeC
TCA
[ENA]
¡û
Identical group No.9030 (1 seq.)
>W2010363079
CADDZC010000025
Acidobacteriota
Acidobacteria bacterium [CADDZC]
47011
46917
-
SeC
TCA
[ENA]
¡û
Identical group No.9031 (1 seq.)
>W2010363191
CADDZE010000049
Acidobacteriota
Acidobacteria bacterium [CADDZE]
9608
9702
+
SeC
TCA
[ENA]
¡û
Identical group No.9051 (2 seq.)
>W2110283711
JACXBS010000002
Acidobacteriota
Kocuria sp. cx-455 [JACXBS]
112794
112888
+
SeC
TCA
[ENA]
¡û
>W2110283770
JACXBT010000003
Acidobacteriota
Kocuria sp. cx-116 [JACXBT]
373419
373513
+
SeC
TCA
[ENA]
¡û
Identical group No.9138 (1 seq.)
>C211181174
CP063849
Acidobacteriota
Paludibaculum fermentans P105 [CP063849]
4307752
4307658
-
SeC
TCA
-
¡û
Identical group No.9194 (2 seq.)
>W1910697611
MEKW01000073
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18 [MEKW]
59824
59730
-
Sec
TCA
[ENA]
¡û
>W2010831036
MEKW01000073
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18 [MEKW]
59824
59730
-
SeC
TCA
[ENA]
¡û
Identical group No.9195 (2 seq.)
>W1910697903
MELF01000015
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 [MELF]
59946
59852
-
Sec
TCA
[ENA]
¡û
>W2010831328
MELF01000015
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 [MELF]
59946
59852
-
SeC
TCA
[ENA]
¡û
Identical group No.9204 (1 seq.)
>W132000193
ARMD01000022
Acidobacteriota
Acidobacteriaceae bacterium KBS 83 [ARMD]
355219
355125
-
seC
TCA
[ENA]
¡û
Identical group No.9339 (1 seq.)
>W2011961598
VANK01000002
Acidobacteriota
Acidobacteria bacterium AB60 [VANK]
306861
306955
+
SeC
TCA
[ENA]
¡û
Identical group No.9703 (1 seq.)
>C181193289
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
401231
401325
+
SeC
TCA
-
¡û
Identical group No.9704 (1 seq.)
>C181193308
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
5127276
5127370
+
SeC
TCA
-
¡û
Identical group No.10146 (1 seq.)
>W1810587128
QFFY01000001
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
309206
309299
+
Sec
TCA
[ENA]
¡û
Identical group No.10570 (2 seq.)
>C024911
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
4117336
4117425
+
SeC
TCA
[Ensembl]
¡û
>W09102602
AAIA01000013
Acidobacteriota
Candidatus Solibacter usitatus Ellin6076 [AAIA]
99836
99743
-
SeC
TCA
[ENA]
¡û
Identical group No.12326 (1 seq.)
>W2010781588
LMUM01000037
Acidobacteriota
Acidobacterium sp. S8 [LMUM]
581321
581414
+
SeC
TCA
[ENA]
¡û
Identical group No.13320 (1 seq.)
>C231331409
CP093313
Acidobacteriota
Occallatibacter riparius DSM 25168 [CP093313]
6047473
6047566
+
SeC
TCA
-
¡û
Identical group No.13796 (1 seq.)
>W1750069289
MNGT01000008
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_65_5 [MNGT]
7458
7551
+
SeC
TCA
[ENA]
¡û
Identical group No.15547 (1 seq.)
>W2110094135
CAJCIS010000273
Acidobacteriota
Acidobacteria bacterium [CAJCIS]
9895
9987
+
SeC
TCA
[ENA]
¡û
Identical group No.481448 (1 seq.)
>W2110093285
CAJCHP010000249
Acidobacteriota
Acidobacteriaceae bacterium [CAJCHP]
802
875
+
Sup
TCA
[ENA]
¡û
Identical group No.853102 (1 seq.)
>W2110093302
CAJCHP010000409
Acidobacteriota
Acidobacteriaceae bacterium [CAJCHP]
15
86
+
Sup
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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