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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoproteota
Anticodon = CGA
HIT:
63 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49773 (1 seq.)
>A171001657
CP002098
Thermoproteota
Ignisphaera aggregans DSM 17230 [CP002098]
1216409
1216498
+
Ser
CGA
-
¡û
Identical group No.49797 (2 seq.)
>A178000021
CP001140
Thermoproteota
Desulfurococcus amylolyticus 1221n [CP001140]
52736
52624
-
Ser
CGA
-
¡û
>A178000321
CP003321
Thermoproteota
Desulfurococcus amylolyticus DSM 16532 [CP003321]
142093
141981
-
Ser
CGA
-
¡û
Identical group No.52823 (2 seq.)
>A171000170
CP000852
Thermoproteota
Caldivirga maquilingensis IC-167 [CP000852]
1221023
1220934
-
Ser
CGA
-
¡û
>W1610000383
AAXQ01000001
Thermoproteota
Caldivirga maquilingensis IC-167 [AAXQ]
111211
111300
+
Ser
CGA
[ENA]
¡û
Identical group No.60143 (1 seq.)
>A178000276
CP002838
Thermoproteota
Pyrolobus fumarii 1A [CP002838]
757742
757625
-
Ser
CGA
-
¡û
Identical group No.63170 (1 seq.)
>A178000663
CP013011
Thermoproteota
Pyrodictium delaneyi Su06 [CP013011]
8501
8385
-
Ser
CGA
-
¡û
Identical group No.64666 (1 seq.)
>At2222
CP000816
Thermoproteota
Ignicoccus hospitalis KIN4/I [CP000816]
1252098
1251982
-
Ser
CGA
[Ensembl]
¡û
Identical group No.64674 (2 seq.)
>A178000143
CP002051
Thermoproteota
Staphylothermus hellenicus DSM 12710 [CP002051]
162209
162359
+
Ser
CGA
-
¡û
>At0377
CP000575
Thermoproteota
Staphylothermus marinus F1 [CP000575]
563621
563770
+
Ser
CGA
[Ensembl]
¡û
Identical group No.65457 (1 seq.)
>A178000173
CP002363
Thermoproteota
Desulfurococcus mucosus DSM 2162 [CP002363]
206126
206236
+
Ser
CGA
-
¡û
Identical group No.74855 (1 seq.)
>A179000005
AP012489
Thermoproteota
Aeropyrum camini SY1 = JCM 12091 [AP012489]
343301
343178
-
Ser
CGA
-
¡û
Identical group No.78553 (1 seq.)
>A178000338
CP003423
Thermoproteota
Fervidicoccus fontis Kam940 [CP003423]
567457
567581
+
Ser
CGA
-
¡û
Identical group No.79658 (1 seq.)
>At0027
BA000002
Thermoproteota
Aeropyrum pernix K1 [BA000002]
340125
340001
-
Ser
CGA
[Ensembl]
¡û
Identical group No.80401 (1 seq.)
>A178000206
CP002529
Thermoproteota
Vulcanisaeta moutnovskia 768-28 [CP002529]
339702
339801
+
Ser
CGA
-
¡û
Identical group No.82067 (2 seq.)
>A17A000937
CP003531
Thermoproteota
Thermogladius calderae 1633 [CP003531]
123006
122902
-
Ser
CGA
-
¡û
>A179000392
CP003531
Thermoproteota
Thermogladius calderae 1633 [CP003531]
123006
122903
-
Ser
CGA
-
¡û
Identical group No.82070 (2 seq.)
>A179000129
CP001939
Thermoproteota
Thermosphaera aggregans DSM 11486 [CP001939]
1079185
1079078
-
Ser
CGA
-
¡û
>A17A000352
CP001939
Thermoproteota
Thermosphaera aggregans DSM 11486 [CP001939]
1079185
1079078
-
Ser
CGA
-
¡û
Identical group No.84143 (1 seq.)
>At0099
CP000493
Thermoproteota
Hyperthermus butylicus DSM 5456 [CP000493]
373519
373640
+
Ser
CGA
[Ensembl]
¡û
Identical group No.87403 (1 seq.)
>A178000402
CP006977
Thermoproteota
Sulfolobus acidocaldarius SUSAZ [CP006977]
475629
475740
+
Ser
CGA
-
¡û
Identical group No.88119 (1 seq.)
>At0521
BA000023
Thermoproteota
Sulfurisphaera tokodaii str. 7 [BA000023]
367006
367116
+
Ser
CGA
[Ensembl]
¡û
Identical group No.90820 (6 seq.)
>A178000582
CP012172
Thermoproteota
Metallosphaera sedula ARS50-1 [CP012172]
2154096
2154205
+
Ser
CGA
-
¡û
>A178000599
CP012173
Thermoproteota
Metallosphaera sedula ARS50-2 [CP012173]
2154092
2154201
+
Ser
CGA
-
¡û
>A178000616
CP012174
Thermoproteota
Metallosphaera sedula ARS120-1 [CP012174]
2154094
2154203
+
Ser
CGA
-
¡û
>A178000633
CP012175
Thermoproteota
Metallosphaera sedula ARS120-2 [CP012175]
2154096
2154205
+
Ser
CGA
-
¡û
>A178000650
CP012176
Thermoproteota
Metallosphaera sedula SARC-M1 [CP012176]
2154096
2154205
+
Ser
CGA
-
¡û
>At0164
CP000682
Thermoproteota
Metallosphaera sedula DSM 5348 [CP000682]
2154080
2154188
+
Ser
CGA
[Ensembl]
¡û
Identical group No.91361 (5 seq.)
>At0217
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
380284
380200
-
Ser
CGA
[Ensembl]
¡û
>At0281
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
2095913
2095791
-
Ser
CGA
[Ensembl]
¡û
>WENV170574352
FLYM01028230
[FLYM] hot springs metagenome; Sediment
478
564
+
Ser
CGA
[ENA]
¢þ
>W1911075125
NMUE01000041
Thermoproteota
Pyrobaculum aerophilum YKB31 [NMUE]
2681
2767
+
Ser
CGA
[ENA]
¡û
>W1911075154
NMUF01000071
Thermoproteota
Pyrobaculum aerophilum YKB32 [NMUF]
674
760
+
Ser
CGA
[ENA]
¡û
Identical group No.91383 (1 seq.)
>At0306
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
1957505
1957604
+
Ser
CGA
[Ensembl]
¡û
Identical group No.93538 (1 seq.)
>A17A001192
CP007493
Thermoproteota
Thermofilum adornatum 1505 [CP007493]
1609364
1609261
-
Ser
CGA
-
¡û
Identical group No.95727 (1 seq.)
>A17A000469
CP002100
Thermoproteota
Vulcanisaeta distributa DSM 14429 [CP002100]
1416757
1416865
+
Ser
CGA
-
¡û
Identical group No.95730 (1 seq.)
>A17A000762
CP003098
Thermoproteota
Pyrobaculum ferrireducens 1860 [CP003098]
1829853
1829752
-
Ser
CGA
-
¡û
Identical group No.95732 (1 seq.)
>A178000166
CP002100
Thermoproteota
Vulcanisaeta distributa DSM 14429 [CP002100]
1828243
1828344
+
Ser
CGA
-
¡û
Identical group No.95734 (1 seq.)
>A179000316
CP003098
Thermoproteota
Pyrobaculum ferrireducens 1860 [CP003098]
1829853
1829752
-
Ser
CGA
-
¡û
Identical group No.97342 (1 seq.)
>A17A000811
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
2189671
2189780
+
Ser
CGA
-
¡û
Identical group No.99002 (3 seq.)
>A178000253
CP002817
Thermoproteota
Sulfolobus acidocaldarius N8 [CP002817]
512634
512745
+
Ser
CGA
-
¡û
>A178000264
CP002818
Thermoproteota
Sulfolobus acidocaldarius Ron12/I [CP002818]
512634
512745
+
Ser
CGA
-
¡û
>At0425
CP000077
Thermoproteota
Sulfolobus acidocaldarius DSM 639 [CP000077]
512631
512740
+
Ser
CGA
[Ensembl]
¡û
Identical group No.100676 (1 seq.)
>A17A000527
CP002529
Thermoproteota
Vulcanisaeta moutnovskia 768-28 [CP002529]
123156
123048
-
Ser
CGA
-
¡û
Identical group No.100681 (2 seq.)
>A179000034
CP001014
Thermoproteota
Pyrobaculum neutrophilum V24Sta [CP001014]
1744634
1744533
-
Ser
CGA
-
¡û
>A17A000083
CP001014
Thermoproteota
Pyrobaculum neutrophilum V24Sta [CP001014]
1744634
1744536
-
Ser
CGA
-
¡û
Identical group No.103459 (1 seq.)
>A17A000940
CP003531
Thermoproteota
Thermogladius calderae 1633 [CP003531]
409641
409543
-
Ser
CGA
-
¡û
Identical group No.103692 (1 seq.)
>At0336
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
624754
624857
+
Ser
CGA
[Ensembl]
¡û
Identical group No.105038 (1 seq.)
>At0575
CP000505
Thermoproteota
Thermofilum pendens Hrk 5 [CP000505]
536447
536563
+
Ser
CGA
[Ensembl]
¡û
Identical group No.105813 (1 seq.)
>A171003924
CP006867
Thermoproteota
Ignicoccus islandicus DSM 13165 [CP006867]
1274333
1274246
-
Ser
CGA
-
¡û
Identical group No.105820 (1 seq.)
>A17A000490
CP002363
Thermoproteota
Desulfurococcus mucosus DSM 2162 [CP002363]
35291
35394
+
Ser
CGA
-
¡û
Identical group No.105821 (1 seq.)
>A178000679
CP017006
Thermoproteota
Sulfolobus sp. A20 [CP017006]
418358
418253
-
Ser
CGA
-
¡û
Identical group No.110633 (1 seq.)
>A17A001068
CP006646
Thermoproteota
Thermofilum adornatum 1910b [CP006646]
679286
679183
-
Ser
CGA
-
¡û
Identical group No.110638 (1 seq.)
>A178000250
CP002656
Thermoproteota
Metallosphaera cuprina Ar-4 [CP002656]
1803718
1803827
+
Ser
CGA
-
¡û
Identical group No.111561 (1 seq.)
>A171003128
CP003378
Thermoproteota
Caldisphaera lagunensis DSM 15908 [CP003378]
625136
625223
+
Ser
CGA
-
¡û
Identical group No.113060 (2 seq.)
>A178000234
CP002590
Thermoproteota
Thermoproteus uzoniensis 768-20 [CP002590]
1549994
1550091
+
Ser
CGA
-
¡û
>A178000719
FN869859
Thermoproteota
Thermoproteus tenax Kra 1 [FN869859]
1494414
1494517
+
Ser
CGA
-
¡û
Identical group No.114347 (15 seq.)
>A178000034
CP001399
Thermoproteota
Sulfolobus islandicus L.S.2.15 [CP001399]
1387794
1387903
+
Ser
CGA
-
¡û
>A178000044
CP001400
Thermoproteota
Sulfolobus islandicus M.14.25 [CP001400]
1311442
1311551
+
Ser
CGA
-
¡û
>A178000054
CP001401
Thermoproteota
Sulfolobus islandicus M.16.27 [CP001401]
1391579
1391688
+
Ser
CGA
-
¡û
>A178000064
CP001402
Thermoproteota
Sulfolobus islandicus M.16.4 [CP001402]
1298221
1298330
+
Ser
CGA
-
¡û
>A178000074
CP001403
Thermoproteota
Sulfolobus islandicus Y.G.57.14 [CP001403]
1287123
1287232
+
Ser
CGA
-
¡û
>A178000089
CP001404
Thermoproteota
Sulfolobus islandicus Y.N.15.51 [CP001404]
1276942
1276833
-
Ser
CGA
-
¡û
>A178000110
CP001800
Thermoproteota
Saccharolobus solfataricus [CP001800]
1613269
1613160
-
Ser
CGA
-
¡û
>A178000188
CP002425
Thermoproteota
Sulfolobus islandicus REY15A [CP002425]
1198817
1198926
+
Ser
CGA
-
¡û
>A178000198
CP002426
Thermoproteota
Sulfolobus islandicus HVE10/4 [CP002426]
1328320
1328429
+
Ser
CGA
-
¡û
>A178000353
CP003928
Thermoproteota
Sulfolobus islandicus LAL14/1 [CP003928]
1184870
1184979
+
Ser
CGA
-
¡û
>A178000531
CP011055
Thermoproteota
Saccharolobus solfataricus SARC-B [CP011055]
1671451
1671342
-
Ser
CGA
-
¡û
>A178000541
CP011056
Thermoproteota
Saccharolobus solfataricus SARC-C [CP011056]
1671452
1671343
-
Ser
CGA
-
¡û
>A178000551
CP011057
Thermoproteota
Saccharolobus solfataricus SULA [CP011057]
1671469
1671360
-
Ser
CGA
-
¡û
>A178000748
LT549890
Thermoproteota
Saccharolobus solfataricus P1 [LT549890]
660485
660376
-
Ser
CGA
-
¡û
>At0505
AE006641
Thermoproteota
Saccharolobus solfataricus P2 [AE006641]
641038
640931
-
Ser
CGA
[Ensembl]
¡û
Identical group No.129648 (1 seq.)
>A178000710
CP020477
Thermoproteota
Acidianus manzaensis YN-25 [CP020477]
1548613
1548720
+
Ser
CGA
-
¡û
Identical group No.134987 (1 seq.)
>A179000538
CP009961
Thermoproteota
Infirmifilum uzonense 1807-2 [CP009961]
1426190
1426293
+
Ser
CGA
-
¡û
Identical group No.134988 (1 seq.)
>A179000549
CP009961
Thermoproteota
Infirmifilum uzonense 1807-2 [CP009961]
1104710
1104607
-
Ser
CGA
-
¡û
Identical group No.141028 (1 seq.)
>A178000217
CP002535
Thermoproteota
Acidianus hospitalis W1 [CP002535]
759235
759344
+
Ser
CGA
-
¡û
Identical group No.146741 (1 seq.)
>A171000983
CP001742
Thermoproteota
Acidilobus saccharovorans 345-15 [CP001742]
894411
894494
+
Ser
CGA
-
¡û
Identical group No.234568 (1 seq.)
>A17A001283
CP009961
Thermoproteota
Infirmifilum uzonense 1807-2 [CP009961]
1104710
1104607
-
Ser
CGA
-
¡û
Identical group No.234569 (1 seq.)
>A17A001297
CP009961
Thermoproteota
Infirmifilum uzonense 1807-2 [CP009961]
1426190
1426293
+
Ser
CGA
-
¡û
Identical group No.244871 (14 seq.)
>A17A000137
CP001399
Thermoproteota
Sulfolobus islandicus L.S.2.15 [CP001399]
1853523
1853625
+
Ser
CGA
-
¡û
>A17A000145
CP001400
Thermoproteota
Sulfolobus islandicus M.14.25 [CP001400]
1763500
1763602
+
Ser
CGA
-
¡û
>A17A000153
CP001401
Thermoproteota
Sulfolobus islandicus M.16.27 [CP001401]
1867528
1867630
+
Ser
CGA
-
¡û
>A17A000161
CP001402
Thermoproteota
Sulfolobus islandicus M.16.4 [CP001402]
1767760
1767862
+
Ser
CGA
-
¡û
>A17A000169
CP001403
Thermoproteota
Sulfolobus islandicus Y.G.57.14 [CP001403]
1799631
1799733
+
Ser
CGA
-
¡û
>A17A000174
CP001404
Thermoproteota
Sulfolobus islandicus Y.N.15.51 [CP001404]
826184
826082
-
Ser
CGA
-
¡û
>A17A000265
CP001800
Thermoproteota
Saccharolobus solfataricus [CP001800]
1112162
1112060
-
Ser
CGA
-
¡û
>A17A000515
CP002425
Thermoproteota
Sulfolobus islandicus REY15A [CP002425]
1647352
1647454
+
Ser
CGA
-
¡û
>A17A000523
CP002426
Thermoproteota
Sulfolobus islandicus HVE10/4 [CP002426]
1791838
1791940
+
Ser
CGA
-
¡û
>A17A000969
CP003928
Thermoproteota
Sulfolobus islandicus LAL14/1 [CP003928]
1632832
1632934
+
Ser
CGA
-
¡û
>A17A001329
CP011055
Thermoproteota
Saccharolobus solfataricus SARC-B [CP011055]
1170325
1170223
-
Ser
CGA
-
¡û
>A17A001337
CP011056
Thermoproteota
Saccharolobus solfataricus SARC-C [CP011056]
1170328
1170226
-
Ser
CGA
-
¡û
>A17A001345
CP011057
Thermoproteota
Saccharolobus solfataricus SULA [CP011057]
1170352
1170250
-
Ser
CGA
-
¡û
>A17A001840
LT549890
Thermoproteota
Saccharolobus solfataricus P1 [LT549890]
185848
185746
-
Ser
CGA
-
¡û
Identical group No.244876 (1 seq.)
>A17A000816
CP003321
Thermoproteota
Desulfurococcus amylolyticus DSM 16532 [CP003321]
1016494
1016609
+
Ser
CGA
-
¡û
Identical group No.252757 (1 seq.)
>A17A000933
CP003423
Thermoproteota
Fervidicoccus fontis Kam940 [CP003423]
864628
864529
-
Ser
CGA
-
¡û
Identical group No.254672 (1 seq.)
>A17A000087
CP001140
Thermoproteota
Desulfurococcus amylolyticus 1221n [CP001140]
895249
895364
+
Ser
CGA
-
¡û
Identical group No.259880 (1 seq.)
>A17A000350
CP001939
Thermoproteota
Thermosphaera aggregans DSM 11486 [CP001939]
1050155
1050045
-
Ser
CGA
-
¡û
Identical group No.259903 (1 seq.)
>A17A000944
CP003531
Thermoproteota
Thermogladius calderae 1633 [CP003531]
696981
696869
-
Ser
CGA
-
¡û
Identical group No.262396 (1 seq.)
>A17A000492
CP002363
Thermoproteota
Desulfurococcus mucosus DSM 2162 [CP002363]
993688
993574
-
Ser
CGA
-
¡û
Identical group No.301912 (1 seq.)
>A17A000032
AP012489
Thermoproteota
Aeropyrum camini SY1 = JCM 12091 [AP012489]
282701
282574
-
Ser
CGA
-
¡û
Identical group No.301918 (2 seq.)
>A17A000092
CP001140
Thermoproteota
Desulfurococcus amylolyticus 1221n [CP001140]
1165138
1165037
-
Ser
CGA
-
¡û
>A17A000821
CP003321
Thermoproteota
Desulfurococcus amylolyticus DSM 16532 [CP003321]
1272242
1272141
-
Ser
CGA
-
¡û
Identical group No.372653 (1 seq.)
>A17A001294
CP009961
Thermoproteota
Infirmifilum uzonense 1807-2 [CP009961]
1418964
1418853
-
Ser
CGA
-
¡û
Identical group No.391902 (1 seq.)
>A17A000938
CP003531
Thermoproteota
Thermogladius calderae 1633 [CP003531]
255220
255118
-
Ser
CGA
-
¡û
Identical group No.422938 (1 seq.)
>A17A000257
CP001742
Thermoproteota
Acidilobus saccharovorans 345-15 [CP001742]
378424
378531
+
Ser
CGA
-
¡û
Identical group No.563654 (1 seq.)
>A17A000612
CP002838
Thermoproteota
Pyrolobus fumarii 1A [CP002838]
1759177
1759068
-
Ser
CGA
-
¡û
Identical group No.640518 (1 seq.)
>A17A000572
CP002656
Thermoproteota
Metallosphaera cuprina Ar-4 [CP002656]
16784
16870
+
Ser
CGA
-
¡û
Identical group No.673280 (1 seq.)
>A17A000029
AP012489
Thermoproteota
Aeropyrum camini SY1 = JCM 12091 [AP012489]
133925
133806
-
Ser
CGA
-
¡û
Identical group No.720705 (1 seq.)
>A17A000066
CP001014
Thermoproteota
Pyrobaculum neutrophilum V24Sta [CP001014]
673194
673102
-
Ser
CGA
-
¡û
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Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
View ClustalW result
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