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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoproteota
Anticodon = CGT
HIT:
31 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74854 (5 seq.)
>A177000049
CP012173
Thermoproteota
Metallosphaera sedula ARS50-2 [CP012173]
16991
17076
+
Thr
CGT
-
¡û
>A177000052
CP012174
Thermoproteota
Metallosphaera sedula ARS120-1 [CP012174]
16989
17074
+
Thr
CGT
-
¡û
>A177000055
CP012175
Thermoproteota
Metallosphaera sedula ARS120-2 [CP012175]
16991
17076
+
Thr
CGT
-
¡û
>A177000058
CP012176
Thermoproteota
Metallosphaera sedula SARC-M1 [CP012176]
16991
17076
+
Thr
CGT
-
¡û
>W1610000310
AAVI01000015
Thermoproteota
Metallosphaera sedula DSM 5348 [AAVI]
18172
18086
-
Thr
CGT
[ENA]
¡û
Identical group No.241264 (1 seq.)
>A178000405
CP006977
Thermoproteota
Sulfolobus acidocaldarius SUSAZ [CP006977]
522042
521941
-
Thr
CGT
-
¡û
Identical group No.242125 (9 seq.)
>A178000038
CP001399
Thermoproteota
Sulfolobus islandicus L.S.2.15 [CP001399]
1830975
1831062
+
Thr
CGT
-
¡û
>A178000068
CP001402
Thermoproteota
Sulfolobus islandicus M.16.4 [CP001402]
1745213
1745300
+
Thr
CGT
-
¡û
>A178000078
CP001403
Thermoproteota
Sulfolobus islandicus Y.G.57.14 [CP001403]
1777084
1777171
+
Thr
CGT
-
¡û
>A178000085
CP001404
Thermoproteota
Sulfolobus islandicus Y.N.15.51 [CP001404]
848731
848644
-
Thr
CGT
-
¡û
>A178000192
CP002425
Thermoproteota
Sulfolobus islandicus REY15A [CP002425]
1624809
1624896
+
Thr
CGT
-
¡û
>A178000202
CP002426
Thermoproteota
Sulfolobus islandicus HVE10/4 [CP002426]
1769294
1769381
+
Thr
CGT
-
¡û
>A178000357
CP003928
Thermoproteota
Sulfolobus islandicus LAL14/1 [CP003928]
1610286
1610373
+
Thr
CGT
-
¡û
>A178000744
LT549890
Thermoproteota
Saccharolobus solfataricus P1 [LT549890]
207390
207303
-
Thr
CGT
-
¡û
>At0496
AE006641
Thermoproteota
Saccharolobus solfataricus P2 [AE006641]
206424
206337
-
Thr
CGT
[Ensembl]
¡û
Identical group No.244883 (4 seq.)
>A178000106
CP001800
Thermoproteota
Saccharolobus solfataricus [CP001800]
1133704
1133617
-
Thr
CGT
-
¡û
>A178000527
CP011055
Thermoproteota
Saccharolobus solfataricus SARC-B [CP011055]
1191867
1191780
-
Thr
CGT
-
¡û
>A178000537
CP011056
Thermoproteota
Saccharolobus solfataricus SARC-C [CP011056]
1191870
1191783
-
Thr
CGT
-
¡û
>A178000547
CP011057
Thermoproteota
Saccharolobus solfataricus SULA [CP011057]
1191894
1191807
-
Thr
CGT
-
¡û
Identical group No.245510 (5 seq.)
>At0213
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
2039014
2039108
+
Thr
CGT
[Ensembl]
¡û
>At0277
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
1797349
1797255
-
Thr
CGT
[Ensembl]
¡û
>At0309
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
168716
168604
-
Thr
CGT
[Ensembl]
¡û
>At0363
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
858497
858389
-
Thr
CGT
[Ensembl]
¡û
>W1610060760
BCLI01000010
Thermoproteota
Vulcanisaeta thermophila CBA1501 [BCLI]
51735
51812
+
Thr
CGT
[ENA]
¡û
Identical group No.252760 (2 seq.)
>A178000048
CP001400
Thermoproteota
Sulfolobus islandicus M.14.25 [CP001400]
1740953
1741040
+
Thr
CGT
-
¡û
>A178000058
CP001401
Thermoproteota
Sulfolobus islandicus M.16.27 [CP001401]
1844981
1845068
+
Thr
CGT
-
¡û
Identical group No.252768 (1 seq.)
>A179000384
CP003423
Thermoproteota
Fervidicoccus fontis Kam940 [CP003423]
864628
864529
-
Thr
CGT
-
¡û
Identical group No.254677 (3 seq.)
>A178000256
CP002817
Thermoproteota
Sulfolobus acidocaldarius N8 [CP002817]
563618
563517
-
Thr
CGT
-
¡û
>A178000267
CP002818
Thermoproteota
Sulfolobus acidocaldarius Ron12/I [CP002818]
563618
563517
-
Thr
CGT
-
¡û
>At0453
CP000077
Thermoproteota
Sulfolobus acidocaldarius DSM 639 [CP000077]
563615
563514
-
Thr
CGT
[Ensembl]
¡û
Identical group No.266438 (1 seq.)
>A178000016
CP000852
Thermoproteota
Caldivirga maquilingensis IC-167 [CP000852]
2030736
2030828
+
Thr
CGT
-
¡û
Identical group No.281498 (1 seq.)
>At0547
BA000023
Thermoproteota
Sulfurisphaera tokodaii str. 7 [BA000023]
306779
306682
-
Thr
CGT
[Ensembl]
¡û
Identical group No.301862 (1 seq.)
>A171001656
CP002098
Thermoproteota
Ignisphaera aggregans DSM 17230 [CP002098]
1171199
1171274
+
Thr
CGT
-
¡û
Identical group No.301937 (4 seq.)
>A178000132
CP001939
Thermoproteota
Thermosphaera aggregans DSM 11486 [CP001939]
1159086
1158983
-
Thr
CGT
-
¡û
>A178000178
CP002363
Thermoproteota
Desulfurococcus mucosus DSM 2162 [CP002363]
1187087
1186987
-
Thr
CGT
-
¡û
>A179000044
CP001140
Thermoproteota
Desulfurococcus amylolyticus 1221n [CP001140]
1165138
1165037
-
Thr
CGT
-
¡û
>A179000357
CP003321
Thermoproteota
Desulfurococcus amylolyticus DSM 16532 [CP003321]
1272242
1272141
-
Thr
CGT
-
¡û
Identical group No.329578 (2 seq.)
>A179000155
CP002051
Thermoproteota
Staphylothermus hellenicus DSM 12710 [CP002051]
1494986
1495087
+
Thr
CGT
-
¡û
>WENV181216358
OFCB01025980
[OFCB] metagenome; hydrothermal vent
131
55
-
Thr
CGT
[ENA]
¢þ
Identical group No.372658 (1 seq.)
>A178000511
CP009961
Thermoproteota
Infirmifilum uzonense 1807-2 [CP009961]
1104307
1104211
-
Thr
CGT
-
¡û
Identical group No.391924 (1 seq.)
>A179000390
CP003531
Thermoproteota
Thermogladius calderae 1633 [CP003531]
255219
255119
-
Thr
CGT
-
¡û
Identical group No.402157 (1 seq.)
>At2244
CP000816
Thermoproteota
Ignicoccus hospitalis KIN4/I [CP000816]
2096
2006
-
Thr
CGT
[Ensembl]
¡û
Identical group No.402218 (1 seq.)
>At0411
CP000575
Thermoproteota
Staphylothermus marinus F1 [CP000575]
883502
883401
-
Thr
CGT
[Ensembl]
¡û
Identical group No.407518 (1 seq.)
>A17A000432
CP002051
Thermoproteota
Staphylothermus hellenicus DSM 12710 [CP002051]
1494986
1495088
+
Thr
CGT
-
¡û
Identical group No.485723 (8 seq.)
>A178000567
CP012172
Thermoproteota
Metallosphaera sedula ARS50-1 [CP012172]
16991
17077
+
Thr
CGT
-
¡û
>A178000584
CP012173
Thermoproteota
Metallosphaera sedula ARS50-2 [CP012173]
16991
17077
+
Thr
CGT
-
¡û
>A178000601
CP012174
Thermoproteota
Metallosphaera sedula ARS120-1 [CP012174]
16989
17075
+
Thr
CGT
-
¡û
>A178000618
CP012175
Thermoproteota
Metallosphaera sedula ARS120-2 [CP012175]
16991
17077
+
Thr
CGT
-
¡û
>A178000635
CP012176
Thermoproteota
Metallosphaera sedula SARC-M1 [CP012176]
16991
17077
+
Thr
CGT
-
¡û
>A179000258
CP002656
Thermoproteota
Metallosphaera cuprina Ar-4 [CP002656]
16784
16869
+
Thr
CGT
-
¡û
>A177000046
CP012172
Thermoproteota
Metallosphaera sedula ARS50-1 [CP012172]
16991
17076
+
Thr
CGT
-
¡û
>At0143
CP000682
Thermoproteota
Metallosphaera sedula DSM 5348 [CP000682]
16975
17060
+
Thr
CGT
[Ensembl]
¡û
Identical group No.507990 (2 seq.)
>A178000389
CP006646
Thermoproteota
Thermofilum adornatum 1910b [CP006646]
978172
978074
-
Thr
CGT
-
¡û
>A178000425
CP007493
Thermoproteota
Thermofilum adornatum 1505 [CP007493]
153582
153484
-
Thr
CGT
-
¡û
Identical group No.538538 (1 seq.)
>A178000709
CP020477
Thermoproteota
Acidianus manzaensis YN-25 [CP020477]
1505139
1505049
-
Thr
CGT
-
¡û
Identical group No.563660 (1 seq.)
>A178000277
CP002838
Thermoproteota
Pyrolobus fumarii 1A [CP002838]
796098
796205
+
Thr
CGT
-
¡û
Identical group No.594134 (1 seq.)
>A178000215
CP002535
Thermoproteota
Acidianus hospitalis W1 [CP002535]
715169
715081
-
Thr
CGT
-
¡û
Identical group No.597308 (1 seq.)
>At0581
CP000505
Thermoproteota
Thermofilum pendens Hrk 5 [CP000505]
743058
743158
+
Thr
CGT
[Ensembl]
¡û
Identical group No.603281 (1 seq.)
>A178000395
CP006867
Thermoproteota
Ignicoccus islandicus DSM 13165 [CP006867]
1285622
1285724
+
Thr
CGT
-
¡û
Identical group No.603283 (1 seq.)
>A178000684
CP017006
Thermoproteota
Sulfolobus sp. A20 [CP017006]
840137
840052
-
Thr
CGT
-
¡û
Identical group No.613930 (1 seq.)
>At0136
CP000493
Thermoproteota
Hyperthermus butylicus DSM 5456 [CP000493]
1131276
1131170
-
Thr
CGT
[Ensembl]
¡û
Identical group No.620858 (1 seq.)
>A178000099
CP001742
Thermoproteota
Acidilobus saccharovorans 345-15 [CP001742]
369075
368971
-
Thr
CGT
-
¡û
Identical group No.647551 (1 seq.)
>A179000372
CP003378
Thermoproteota
Caldisphaera lagunensis DSM 15908 [CP003378]
672028
672127
+
Thr
CGT
-
¡û
Identical group No.673289 (2 seq.)
>A179000008
AP012489
Thermoproteota
Aeropyrum camini SY1 = JCM 12091 [AP012489]
133925
133806
-
Thr
CGT
-
¡û
>At0018
BA000002
Thermoproteota
Aeropyrum pernix K1 [BA000002]
125186
125063
-
Thr
CGT
[Ensembl]
¡û
Identical group No.734350 (1 seq.)
>A178000664
CP013011
Thermoproteota
Pyrodictium delaneyi Su06 [CP013011]
1168645
1168524
-
Thr
CGT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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