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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoproteota
Anticodon = GTA
HIT:
44 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20004 (27 seq.)
>A172000004
CP001399
Thermoproteota
Sulfolobus islandicus L.S.2.15 [CP001399]
1386281
1386370
+
Tyr
GTA
-
¡û
>A172000005
CP001400
Thermoproteota
Sulfolobus islandicus M.14.25 [CP001400]
1309929
1310018
+
Tyr
GTA
-
¡û
>A172000006
CP001401
Thermoproteota
Sulfolobus islandicus M.16.27 [CP001401]
1390066
1390155
+
Tyr
GTA
-
¡û
>A172000007
CP001402
Thermoproteota
Sulfolobus islandicus M.16.4 [CP001402]
1296708
1296797
+
Tyr
GTA
-
¡û
>A172000008
CP001403
Thermoproteota
Sulfolobus islandicus Y.G.57.14 [CP001403]
1285610
1285699
+
Tyr
GTA
-
¡û
>A172000009
CP001404
Thermoproteota
Sulfolobus islandicus Y.N.15.51 [CP001404]
1278455
1278366
-
Tyr
GTA
-
¡û
>A172000010
CP001800
Thermoproteota
Saccharolobus solfataricus [CP001800]
1614782
1614693
-
Tyr
GTA
-
¡û
>A172000019
CP002425
Thermoproteota
Sulfolobus islandicus REY15A [CP002425]
1197304
1197393
+
Tyr
GTA
-
¡û
>A172000020
CP002426
Thermoproteota
Sulfolobus islandicus HVE10/4 [CP002426]
1326807
1326896
+
Tyr
GTA
-
¡û
>A172000033
CP003928
Thermoproteota
Sulfolobus islandicus LAL14/1 [CP003928]
1183357
1183446
+
Tyr
GTA
-
¡û
>A172000039
CP011055
Thermoproteota
Saccharolobus solfataricus SARC-B [CP011055]
1672964
1672875
-
Tyr
GTA
-
¡û
>A172000040
CP011056
Thermoproteota
Saccharolobus solfataricus SARC-C [CP011056]
1672965
1672876
-
Tyr
GTA
-
¡û
>A172000041
CP011057
Thermoproteota
Saccharolobus solfataricus SULA [CP011057]
1672982
1672893
-
Tyr
GTA
-
¡û
>A172000060
LT549890
Thermoproteota
Saccharolobus solfataricus P1 [LT549890]
661998
661909
-
Tyr
GTA
-
¡û
>W1911654398
QEFG01000002
Thermoproteota
Sulfolobus islandicus [QEFG]
160052
160141
+
Tyr
GTA
[ENA]
¡û
>W1610001071
ACQS01000001
Thermoproteota
Saccharolobus solfataricus Feb-98 [ACQS]
129393
129482
+
Tyr
GTA
[ENA]
¡û
>W1610001524
ACUK01000205
Thermoproteota
Saccharolobus solfataricus Feb-98 [ACUK]
175243
175154
-
Tyr
GTA
[ENA]
¡û
>W1610004540
AHJK01000001
Thermoproteota
Sulfolobus islandicus M.16.2 [AHJK]
1362352
1362441
+
Tyr
GTA
[ENA]
¡û
>W1610004570
AHJL01000005
Thermoproteota
Sulfolobus islandicus M.16.12 [AHJL]
386163
386252
+
Tyr
GTA
[ENA]
¡û
>W1610004599
AHJM01000003
Thermoproteota
Sulfolobus islandicus M.16.13 [AHJM]
440547
440636
+
Tyr
GTA
[ENA]
¡û
>W1610004627
AHJN01000003
Thermoproteota
Sulfolobus islandicus M.16.22 [AHJN]
386787
386876
+
Tyr
GTA
[ENA]
¡û
>W1610004655
AHJO01000001
Thermoproteota
Sulfolobus islandicus M.16.23 [AHJO]
1305328
1305417
+
Tyr
GTA
[ENA]
¡û
>W1610004685
AHJP01000004
Thermoproteota
Sulfolobus islandicus M.16.30 [AHJP]
413349
413438
+
Tyr
GTA
[ENA]
¡û
>W1610004713
AHJQ01000001
Thermoproteota
Sulfolobus islandicus M.16.40 [AHJQ]
1327439
1327528
+
Tyr
GTA
[ENA]
¡û
>W1610004742
AHJR01000001
Thermoproteota
Sulfolobus islandicus M.16.43 [AHJR]
1281391
1281480
+
Tyr
GTA
[ENA]
¡û
>W1610004772
AHJS01000002
Thermoproteota
Sulfolobus islandicus M.16.46 [AHJS]
474522
474611
+
Tyr
GTA
[ENA]
¡û
>W1610004800
AHJT01000001
Thermoproteota
Sulfolobus islandicus M.16.47 [AHJT]
1335874
1335963
+
Tyr
GTA
[ENA]
¡û
Identical group No.234633 (1 seq.)
>At2299
CP000077
Thermoproteota
Sulfolobus acidocaldarius DSM 639 [CP000077]
716324
716233
-
Tyr
GTA
[Ensembl]
¡û
Identical group No.235324 (17 seq.)
>A179000056
CP001399
Thermoproteota
Sulfolobus islandicus L.S.2.15 [CP001399]
1386281
1386369
+
Tyr
GTA
-
¡û
>A179000062
CP001400
Thermoproteota
Sulfolobus islandicus M.14.25 [CP001400]
1309929
1310017
+
Tyr
GTA
-
¡û
>A179000068
CP001401
Thermoproteota
Sulfolobus islandicus M.16.27 [CP001401]
1390066
1390154
+
Tyr
GTA
-
¡û
>A179000074
CP001402
Thermoproteota
Sulfolobus islandicus M.16.4 [CP001402]
1296708
1296796
+
Tyr
GTA
-
¡û
>A179000080
CP001403
Thermoproteota
Sulfolobus islandicus Y.G.57.14 [CP001403]
1285610
1285698
+
Tyr
GTA
-
¡û
>A179000088
CP001404
Thermoproteota
Sulfolobus islandicus Y.N.15.51 [CP001404]
1278455
1278367
-
Tyr
GTA
-
¡û
>A179000112
CP001800
Thermoproteota
Saccharolobus solfataricus [CP001800]
1614782
1614694
-
Tyr
GTA
-
¡û
>A179000214
CP002425
Thermoproteota
Sulfolobus islandicus REY15A [CP002425]
1197304
1197392
+
Tyr
GTA
-
¡û
>A179000220
CP002426
Thermoproteota
Sulfolobus islandicus HVE10/4 [CP002426]
1326807
1326895
+
Tyr
GTA
-
¡û
>A179000411
CP003928
Thermoproteota
Sulfolobus islandicus LAL14/1 [CP003928]
1183357
1183445
+
Tyr
GTA
-
¡û
>A179000571
CP011055
Thermoproteota
Saccharolobus solfataricus SARC-B [CP011055]
1672964
1672876
-
Tyr
GTA
-
¡û
>A179000577
CP011056
Thermoproteota
Saccharolobus solfataricus SARC-C [CP011056]
1672965
1672877
-
Tyr
GTA
-
¡û
>A179000583
CP011057
Thermoproteota
Saccharolobus solfataricus SULA [CP011057]
1672982
1672894
-
Tyr
GTA
-
¡û
>A179000666
CP017006
Thermoproteota
Sulfolobus sp. A20 [CP017006]
419876
419787
-
Tyr
GTA
-
¡û
>A179000733
LT549890
Thermoproteota
Saccharolobus solfataricus P1 [LT549890]
661998
661910
-
Tyr
GTA
-
¡û
>A177000064
CP017006
Thermoproteota
Sulfolobus sp. A20 [CP017006]
419876
419787
-
Tyr
GTA
-
¡û
>At0506
AE006641
Thermoproteota
Saccharolobus solfataricus P2 [AE006641]
642552
642464
-
Tyr
GTA
[Ensembl]
¡û
Identical group No.235730 (6 seq.)
>A178000581
CP012172
Thermoproteota
Metallosphaera sedula ARS50-1 [CP012172]
2152539
2152628
+
Tyr
GTA
-
¡û
>A178000598
CP012173
Thermoproteota
Metallosphaera sedula ARS50-2 [CP012173]
2152535
2152624
+
Tyr
GTA
-
¡û
>A178000615
CP012174
Thermoproteota
Metallosphaera sedula ARS120-1 [CP012174]
2152537
2152626
+
Tyr
GTA
-
¡û
>A178000632
CP012175
Thermoproteota
Metallosphaera sedula ARS120-2 [CP012175]
2152539
2152628
+
Tyr
GTA
-
¡û
>A178000649
CP012176
Thermoproteota
Metallosphaera sedula SARC-M1 [CP012176]
2152539
2152628
+
Tyr
GTA
-
¡û
>At0163
CP000682
Thermoproteota
Metallosphaera sedula DSM 5348 [CP000682]
2152523
2152611
+
Tyr
GTA
[Ensembl]
¡û
Identical group No.238726 (2 seq.)
>A178000216
CP002535
Thermoproteota
Acidianus hospitalis W1 [CP002535]
757708
757797
+
Tyr
GTA
-
¡û
>A177000023
CP002535
Thermoproteota
Acidianus hospitalis W1 [CP002535]
757708
757796
+
Tyr
GTA
-
¡û
Identical group No.238968 (1 seq.)
>A17A001530
CP017006
Thermoproteota
Sulfolobus sp. A20 [CP017006]
419876
419786
-
Tyr
GTA
-
¡û
Identical group No.240164 (1 seq.)
>A178000249
CP002656
Thermoproteota
Metallosphaera cuprina Ar-4 [CP002656]
1802162
1802252
+
Tyr
GTA
-
¡û
Identical group No.244877 (3 seq.)
>A17A000088
CP001140
Thermoproteota
Desulfurococcus amylolyticus 1221n [CP001140]
973940
973840
-
Tyr
GTA
-
¡û
>A17A000351
CP001939
Thermoproteota
Thermosphaera aggregans DSM 11486 [CP001939]
1055960
1055859
-
Tyr
GTA
-
¡û
>A17A000817
CP003321
Thermoproteota
Desulfurococcus amylolyticus DSM 16532 [CP003321]
1094061
1093961
-
Tyr
GTA
-
¡û
Identical group No.262395 (1 seq.)
>A17A000491
CP002363
Thermoproteota
Desulfurococcus mucosus DSM 2162 [CP002363]
101652
101761
+
Tyr
GTA
-
¡û
Identical group No.281492 (1 seq.)
>At0520
BA000023
Thermoproteota
Sulfurisphaera tokodaii str. 7 [BA000023]
361250
361342
+
Tyr
GTA
[Ensembl]
¡û
Identical group No.306752 (1 seq.)
>At0252
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
379366
379252
-
Tyr
GTA
[Ensembl]
¡û
Identical group No.306879 (1 seq.)
>At0320
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
1329907
1329769
-
Tyr
GTA
[Ensembl]
¡û
Identical group No.324190 (1 seq.)
>At0219
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
837785
837670
-
Tyr
GTA
[Ensembl]
¡û
Identical group No.338249 (1 seq.)
>A17A000471
CP002100
Thermoproteota
Vulcanisaeta distributa DSM 14429 [CP002100]
1557879
1557781
-
Tyr
GTA
-
¡û
Identical group No.349707 (1 seq.)
>A179000350
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
1678862
1678747
-
Tyr
GTA
-
¡û
Identical group No.372650 (1 seq.)
>A17A000538
CP002529
Thermoproteota
Vulcanisaeta moutnovskia 768-28 [CP002529]
2270296
2270394
+
Tyr
GTA
-
¡û
Identical group No.372669 (1 seq.)
>A179000027
CP001014
Thermoproteota
Pyrobaculum neutrophilum V24Sta [CP001014]
506083
506199
+
Tyr
GTA
-
¡û
Identical group No.393219 (1 seq.)
>At0342
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
1395175
1395291
+
Tyr
GTA
[Ensembl]
¡û
Identical group No.456316 (2 seq.)
>A179000251
CP002590
Thermoproteota
Thermoproteus uzoniensis 768-20 [CP002590]
1843705
1843590
-
Tyr
GTA
-
¡û
>A179000699
FN869859
Thermoproteota
Thermoproteus tenax Kra 1 [FN869859]
1252042
1252156
+
Tyr
GTA
-
¡û
Identical group No.485720 (14 seq.)
>A17A000139
CP001399
Thermoproteota
Sulfolobus islandicus L.S.2.15 [CP001399]
2020998
2020911
-
Tyr
GTA
-
¡û
>A17A000147
CP001400
Thermoproteota
Sulfolobus islandicus M.14.25 [CP001400]
1888917
1888830
-
Tyr
GTA
-
¡û
>A17A000155
CP001401
Thermoproteota
Sulfolobus islandicus M.16.27 [CP001401]
1995013
1994926
-
Tyr
GTA
-
¡û
>A17A000163
CP001402
Thermoproteota
Sulfolobus islandicus M.16.4 [CP001402]
1893178
1893091
-
Tyr
GTA
-
¡û
>A17A000171
CP001403
Thermoproteota
Sulfolobus islandicus Y.G.57.14 [CP001403]
1959219
1959132
-
Tyr
GTA
-
¡û
>A17A000172
CP001404
Thermoproteota
Sulfolobus islandicus Y.N.15.51 [CP001404]
666501
666588
+
Tyr
GTA
-
¡û
>A17A000263
CP001800
Thermoproteota
Saccharolobus solfataricus [CP001800]
975555
975642
+
Tyr
GTA
-
¡û
>A17A000517
CP002425
Thermoproteota
Sulfolobus islandicus REY15A [CP002425]
1786821
1786734
-
Tyr
GTA
-
¡û
>A17A000525
CP002426
Thermoproteota
Sulfolobus islandicus HVE10/4 [CP002426]
1924079
1923992
-
Tyr
GTA
-
¡û
>A17A000971
CP003928
Thermoproteota
Sulfolobus islandicus LAL14/1 [CP003928]
1759611
1759524
-
Tyr
GTA
-
¡û
>A17A001327
CP011055
Thermoproteota
Saccharolobus solfataricus SARC-B [CP011055]
1033718
1033805
+
Tyr
GTA
-
¡û
>A17A001335
CP011056
Thermoproteota
Saccharolobus solfataricus SARC-C [CP011056]
1033696
1033783
+
Tyr
GTA
-
¡û
>A17A001343
CP011057
Thermoproteota
Saccharolobus solfataricus SULA [CP011057]
1033733
1033820
+
Tyr
GTA
-
¡û
>A17A001838
LT549890
Thermoproteota
Saccharolobus solfataricus P1 [LT549890]
50310
50397
+
Tyr
GTA
-
¡û
Identical group No.538539 (2 seq.)
>A178000711
CP020477
Thermoproteota
Acidianus manzaensis YN-25 [CP020477]
1551837
1551753
-
Tyr
GTA
-
¡û
>A177000070
CP020477
Thermoproteota
Acidianus manzaensis YN-25 [CP020477]
1551837
1551753
-
Tyr
GTA
-
¡û
Identical group No.603279 (1 seq.)
>A17A000424
CP002051
Thermoproteota
Staphylothermus hellenicus DSM 12710 [CP002051]
91456
91567
+
Tyr
GTA
-
¡û
Identical group No.620857 (1 seq.)
>A178000098
CP001742
Thermoproteota
Acidilobus saccharovorans 345-15 [CP001742]
258392
258506
+
Tyr
GTA
-
¡û
Identical group No.673281 (1 seq.)
>A17A000463
CP002098
Thermoproteota
Ignisphaera aggregans DSM 17230 [CP002098]
1739331
1739425
+
Tyr
GTA
-
¡û
Identical group No.673283 (2 seq.)
>A178000012
AP012489
Thermoproteota
Aeropyrum camini SY1 = JCM 12091 [AP012489]
1396556
1396443
-
Tyr
GTA
-
¡û
>At0049
BA000002
Thermoproteota
Aeropyrum pernix K1 [BA000002]
1462307
1462194
-
Tyr
GTA
[Ensembl]
¡û
Identical group No.673287 (2 seq.)
>A178000020
CP001140
Thermoproteota
Desulfurococcus amylolyticus 1221n [CP001140]
27023
26937
-
Tyr
GTA
-
¡û
>A178000320
CP003321
Thermoproteota
Desulfurococcus amylolyticus DSM 16532 [CP003321]
113917
113831
-
Tyr
GTA
-
¡û
Identical group No.673290 (2 seq.)
>A178000342
CP003531
Thermoproteota
Thermogladius calderae 1633 [CP003531]
86396
86267
-
Tyr
GTA
-
¡û
>A179000170
CP002098
Thermoproteota
Ignisphaera aggregans DSM 17230 [CP002098]
1739331
1739424
+
Tyr
GTA
-
¡û
Identical group No.705183 (1 seq.)
>A179000379
CP003423
Thermoproteota
Fervidicoccus fontis Kam940 [CP003423]
253853
253962
+
Tyr
GTA
-
¡û
Identical group No.707050 (1 seq.)
>A17A000931
CP003423
Thermoproteota
Fervidicoccus fontis Kam940 [CP003423]
253853
253963
+
Tyr
GTA
-
¡û
Identical group No.720707 (1 seq.)
>A17A000611
CP002838
Thermoproteota
Pyrolobus fumarii 1A [CP002838]
1006998
1007175
+
Tyr
GTA
-
¡û
Identical group No.720711 (1 seq.)
>A179000288
CP002838
Thermoproteota
Pyrolobus fumarii 1A [CP002838]
1006998
1007175
+
Tyr
GTA
-
¡û
Identical group No.720713 (1 seq.)
>A179000534
CP009961
Thermoproteota
Infirmifilum uzonense 1807-2 [CP009961]
952681
952837
+
Tyr
GTA
-
¡û
Identical group No.734347 (1 seq.)
>A17A000349
CP001939
Thermoproteota
Thermosphaera aggregans DSM 11486 [CP001939]
979097
979008
-
Tyr
GTA
-
¡û
Identical group No.734351 (1 seq.)
>A179000132
CP001939
Thermoproteota
Thermosphaera aggregans DSM 11486 [CP001939]
979096
979012
-
Tyr
GTA
-
¡û
Identical group No.734354 (3 seq.)
>A179000650
CP013011
Thermoproteota
Pyrodictium delaneyi Su06 [CP013011]
56301
56142
-
Tyr
GTA
-
¡û
>A17A001486
CP013011
Thermoproteota
Pyrodictium delaneyi Su06 [CP013011]
56301
56145
-
Tyr
GTA
-
¡û
>At0130
CP000493
Thermoproteota
Hyperthermus butylicus DSM 5456 [CP000493]
447553
447388
-
Tyr
GTA
[Ensembl]
¡û
Identical group No.741498 (1 seq.)
>At2241
CP000816
Thermoproteota
Ignicoccus hospitalis KIN4/I [CP000816]
169708
169564
-
Tyr
GTA
[Ensembl]
¡û
Identical group No.741524 (2 seq.)
>A178000144
CP002051
Thermoproteota
Staphylothermus hellenicus DSM 12710 [CP002051]
210846
211014
+
Tyr
GTA
-
¡û
>At0380
CP000575
Thermoproteota
Staphylothermus marinus F1 [CP000575]
625683
625850
+
Tyr
GTA
[Ensembl]
¡û
Identical group No.745163 (1 seq.)
>A17A001078
CP006867
Thermoproteota
Ignicoccus islandicus DSM 13165 [CP006867]
552354
552494
+
Tyr
GTA
-
¡û
Identical group No.745166 (1 seq.)
>A179000447
CP006867
Thermoproteota
Ignicoccus islandicus DSM 13165 [CP006867]
552354
552494
+
Tyr
GTA
-
¡û
Identical group No.746029 (1 seq.)
>A178000174
CP002363
Thermoproteota
Desulfurococcus mucosus DSM 2162 [CP002363]
234769
234858
+
Tyr
GTA
-
¡û
Identical group No.761506 (1 seq.)
>A17A000041
CP000852
Thermoproteota
Caldivirga maquilingensis IC-167 [CP000852]
1237267
1237384
+
Tyr
GTA
-
¡û
Identical group No.761507 (1 seq.)
>A179000010
CP000852
Thermoproteota
Caldivirga maquilingensis IC-167 [CP000852]
1237267
1237384
+
Tyr
GTA
-
¡û
Identical group No.775791 (1 seq.)
>A178000335
CP003378
Thermoproteota
Caldisphaera lagunensis DSM 15908 [CP003378]
1304706
1304815
+
Tyr
GTA
-
¡û
Identical group No.819404 (1 seq.)
>At0585
CP000505
Thermoproteota
Thermofilum pendens Hrk 5 [CP000505]
892743
892941
+
Tyr
GTA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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