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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
52 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170720558
LSQX01157523
653653
Actinomycetota
CTG
Gln
>WENV170726739
LSQX01392554
653653
Actinomycetota
CTG
Gln
>WENV170721858
LSQX01206474
270993
Actinomycetota
CGG
Pro
>WENV170723520
LSQX01271791
270993
Actinomycetota
CGG
Pro
>WENV170718811
LSQX01091279
30737
Actinomycetota
CGA
Ser
>WENV170718545
LSQX01080847
294305
Actinomycetota
GAT
Ile
>WENV170720717
LSQX01163547
72985
Actinomycetota
GAG
Leu
>WENV170726869
LSQX01396775
72985
Actinomycetota
GAG
Leu
>WENV170721888
LSQX01207704
452065
Actinomycetota
GTT
Asn
>WENV170717878
LSQX01053010
653754
Actinomycetota
TCC
Gly
>WENV170726109
LSQX01368202
653754
Actinomycetota
TCC
Gly
>WENV170717835
LSQX01051485
281017
Actinomycetota
GGG
Pro
>WENV170719412
LSQX01113538
281017
Actinomycetota
GGG
Pro
>WENV170723534
LSQX01272262
451993
Actinomycetota
CTC
Glu
>WENV170724925
LSQX01323960
455044
Actinomycetota
GGT
Thr
>WENV170722090
LSQX01215834
457532
Actinomycetota
CGC
Ala
>WENV170724557
LSQX01309576
780841
Actinomycetota
CCC
Gly
>WENV170722478
LSQX01230822
506607
Actinomycetota
CTT
Lys
>WENV170721605
LSQX01196520
463231
Actinomycetota
CCT
Arg
>WENV170718740
LSQX01089402
74159
Actinomycetota
GGA
Ser
>WENV170726701
LSQX01390615
74159
Actinomycetota
GGA
Ser
>WENV170721468
LSQX01191646
782087
Actinomycetota
CCC
Gly
>WENV170726740
LSQX01392554
457511
Actinomycetota
CTC
Glu
>WENV170717020
LSQX01020605
271048
Actinomycetota
CGG
Pro
>WENV170719871
LSQX01131968
660442
Actinomycetota
CAC
Val
>WENV170724693
LSQX01315195
660442
Actinomycetota
CAC
Val
>WENV170718620
LSQX01083655
271435
Actinomycetota
CAT
Met
>WENV170718621
LSQX01083655
271435
Actinomycetota
CAT
Met
>WENV170721564
LSQX01195120
271435
Actinomycetota
CAT
Met
>WENV170717991
LSQX01057578
36899
Actinomycetota
CGA
Ser
>WENV170719027
LSQX01099568
36899
Actinomycetota
CGA
Ser
>WENV170725908
LSQX01360434
452358
Actinomycetota
CCG
Arg
>WENV170717102
LSQX01024543
656379
Actinomycetota
CAC
Val
>WENV170719064
LSQX01101134
451988
Actinomycetota
CCT
Arg
>WENV170718108
LSQX01061988
663247
Actinomycetota
GAC
Val
>WENV170726364
LSQX01377195
451990
Actinomycetota
GGT
Thr
>WENV170726703
LSQX01390759
276738
Actinomycetota
GGG
Pro
>WENV170717937
LSQX01055213
659861
Actinomycetota
CTG
Gln
>WENV170722477
LSQX01230822
511537
Actinomycetota
GTG
His
>WENV170724439
LSQX01305768
452211
Actinomycetota
CGC
Ala
>WENV170719395
LSQX01112932
452069
Actinomycetota
TGC
Ala
>WENV170723454
LSQX01268695
452069
Actinomycetota
TGC
Ala
>WENV170719870
LSQX01131968
653654
Actinomycetota
GAC
Val
>WENV170719869
LSQX01131968
779542
Actinomycetota
GCA
Cys
>WENV170724694
LSQX01315195
779542
Actinomycetota
GCA
Cys
>WENV170719394
LSQX01112932
271000
Actinomycetota
GAT
Ile
>WENV170723453
LSQX01268695
271000
Actinomycetota
GAT
Ile
>WENV170717275
LSQX01029919
779543
Actinomycetota
CCC
Gly
>WENV170720557
LSQX01157516
272240
Actinomycetota
CGG
Pro
>WENV170718235
LSQX01067411
452076
Actinomycetota
TGT
Thr
>WENV170721800
LSQX01203851
452076
Actinomycetota
TGT
Thr
>WENV170723002
LSQX01251006
452076
Actinomycetota
TGT
Thr
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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