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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = TCA
HIT:
41 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.53 (2 seq.)
>W1660001488
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
877290
877386
+
SeC(p)
TCA
[ENA]
¡û
>W1760000789
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
877290
877386
+
SeC(p)
TCA
[ENA]
¡û
Identical group No.169 (3 seq.)
>W1720002998
MNDE01000054
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_17 [MNDE]
21407
21309
-
SeC
TCA
[ENA]
¡û
>W1720003001
MNEB01000062
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_57_12 [MNEB]
28543
28445
-
SeC
TCA
[ENA]
¡û
>W1720003017
MNJF01000159
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_4_57_11 [MNJF]
2115
2213
+
SeC
TCA
[ENA]
¡û
Identical group No.170 (2 seq.)
>W1720003012
MNHV01000134
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_60_7 [MNHV]
6420
6518
+
SeC
TCA
[ENA]
¡û
>W1720003020
MNKN01000142
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_60_10 [MNKN]
7786
7884
+
SeC
TCA
[ENA]
¡û
Identical group No.210 (3 seq.)
>W1710892322
LNDP01000024
Acidobacteriota
Acidobacteria bacterium Ga0074141 [LNDP]
888685
888587
-
SeC(p)
TCA
[ENA]
¡û
>WENV170708825
LNFM01000001
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
857051
856953
-
SeC(p)
TCA
[ENA]
¢þ
>W1610752588
LNDP01000024
Acidobacteriota
Acidobacteria bacterium Ga0074141 [LNDP]
888685
888587
-
SeC(p)
TCA
[ENA]
¡û
Identical group No.260 (1 seq.)
>W131237256
AUNQ01000144
Acidobacteriota
Acidobacteria bacterium JGI 0001001-H03 [AUNQ]
11431
11333
-
SeC(p)
TCA
[ENA]
¡û
Identical group No.297 (2 seq.)
>W1910697565
MEKV01000107
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_36 [MEKV]
96993
97091
+
Sec
TCA
[ENA]
¡û
>W1910697781
MELC01000036
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 [MELC]
220901
220999
+
Sec
TCA
[ENA]
¡û
Identical group No.342 (3 seq.)
>W1910697279
MEKM01000077
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_01_FULL_67_28 [MEKM]
6273
6173
-
Sec
TCA
[ENA]
¡û
>W1910697295
MEKN01000028
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57 [MEKN]
2443
2343
-
Sec
TCA
[ENA]
¡û
>W1910697329
MEKO01000102
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_12_FULL_67_30 [MEKO]
5963
5863
-
Sec
TCA
[ENA]
¡û
Identical group No.376 (1 seq.)
>W1711573884
MNEA01000140
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_57_6 [MNEA]
1562
1464
-
SeC(p)
TCA
[ENA]
¡û
Identical group No.413 (1 seq.)
>W141696014
JMFG01000007
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
6067
6162
+
SeC(p)
TCA
[ENA]
¡û
Identical group No.482 (1 seq.)
>W1720003019
MNJR01000093
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
58948
58850
-
SeC
TCA
[ENA]
¡û
Identical group No.517 (1 seq.)
>W1711573396
MNDC01000031
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_58_27 [MNDC]
23413
23511
+
SeC(p)
TCA
[ENA]
¡û
Identical group No.721 (1 seq.)
>W1711573494
MNDG01000101
Acidobacteriota
Acidobacteriales bacterium 13_2_20CM_55_8 [MNDG]
10922
10825
-
SeC(p)
TCA
[ENA]
¡û
Identical group No.723 (3 seq.)
>W1710893027
LNEI01000019
Acidobacteriota
Acidobacteria bacterium Ga0077534 [LNEI]
19018
19115
+
SeC(p)
TCA
[ENA]
¡û
>WENV170708913
LNFM01000025
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
33146
33049
-
SeC(p)
TCA
[ENA]
¢þ
>W1610753293
LNEI01000019
Acidobacteriota
Acidobacteria bacterium Ga0077534 [LNEI]
19018
19115
+
SeC(p)
TCA
[ENA]
¡û
Identical group No.817 (1 seq.)
>W1910697774
MELB01000160
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_10 [MELB]
3038
3135
+
Sec
TCA
[ENA]
¡û
Identical group No.930 (1 seq.)
>W1910697364
MEKQ01000039
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_60_20 [MEKQ]
7660
7563
-
Sec
TCA
[ENA]
¡û
Identical group No.1076 (5 seq.)
>W1720003006
MNEY01000158
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_56_16 [MNEY]
22573
22476
-
SeC
TCA
[ENA]
¡û
>W1720003011
MNGU01000149
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_56_11 [MNGU]
7605
7702
+
SeC
TCA
[ENA]
¡û
>W1720003013
MNHW01000053
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_56_5 [MNHW]
11297
11200
-
SeC
TCA
[ENA]
¡û
>W1720003014
MNHX01000143
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_56_11 [MNHX]
8703
8606
-
SeC
TCA
[ENA]
¡û
>W1720003021
MNKP01000177
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_55_15 [MNKP]
6241
6144
-
SeC
TCA
[ENA]
¡û
Identical group No.1171 (1 seq.)
>W1910697350
MEKP01000277
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13 [MEKP]
6738
6835
+
Sec
TCA
[ENA]
¡û
Identical group No.1294 (1 seq.)
>W1930012639
MEKZ01000427
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22 [MEKZ]
10244
10147
-
SeC
TCA
[ENA]
¡û
Identical group No.1317 (3 seq.)
>W1711576096
MNKK01000116
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_68_7 [MNKK]
8167
8264
+
SeC(p)
TCA
[ENA]
¡û
>WENV180295480
OBIZ01113705
[OBIZ] soil metagenome; soil
350
253
-
SeC
TCA
[ENA]
¢þ
>WENV180352339
OBLQ010227372
[OBLQ] soil metagenome; soil
507
410
-
SeC
TCA
[ENA]
¢þ
Identical group No.1465 (1 seq.)
>C161037459
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
1275848
1275945
+
SeC(p)
TCA
-
¡û
Identical group No.1912 (4 seq.)
>W1720003000
MNDZ01000129
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_66_4 [MNDZ]
4528
4432
-
SeC
TCA
[ENA]
¡û
>W1720003005
MNEX01000129
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_65_14 [MNEX]
10742
10838
+
SeC
TCA
[ENA]
¡û
>W1720003007
MNFU01000001
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_65_8 [MNFU]
20058
19962
-
SeC
TCA
[ENA]
¡û
>W1720003010
MNGT01000243
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_65_5 [MNGT]
8198
8294
+
SeC
TCA
[ENA]
¡û
Identical group No.2286 (2 seq.)
>W1910697499
MEKU01000010
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 [MEKU]
32919
33015
+
Sec
TCA
[ENA]
¡û
>W1910697855
MELD01000141
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14 [MELD]
30022
30118
+
Sec
TCA
[ENA]
¡û
Identical group No.2607 (1 seq.)
>C028551
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
1226070
1225977
-
SeC
TCA
[Ensembl]
¡û
Identical group No.3700 (3 seq.)
>W1710892202
LNDN01000127
Acidobacteriota
Acidobacteria bacterium Ga0077522 [LNDN]
15600
15695
+
SeC(p)
TCA
[ENA]
¡û
>WENV170711148
LNFM01003754
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
614
519
-
SeC(p)
TCA
[ENA]
¢þ
>W1610752468
LNDN01000127
Acidobacteriota
Acidobacteria bacterium Ga0077522 [LNDN]
15600
15695
+
SeC(p)
TCA
[ENA]
¡û
Identical group No.3788 (4 seq.)
>WENV180692253
OCZS010428806
[OCZS] soil metagenome; soil
185
280
+
SeC
TCA
[ENA]
¢þ
>WENV181192974
OEPS011278546
[OEPS] soil metagenome; soil
179
84
-
SeC
TCA
[ENA]
¢þ
>WENV183670974
ORJL011010619
[ORJL] groundwater metagenome; groundwater
412
507
+
SeC
TCA
[ENA]
¢þ
>W1910697884
MELE01000126
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b [MELE]
4579
4674
+
Sec
TCA
[ENA]
¡û
Identical group No.5073 (1 seq.)
>W1910697412
MEKR01000197
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 [MEKR]
6048
5953
-
Sec
TCA
[ENA]
¡û
Identical group No.5418 (1 seq.)
>C161083720
CP015136
Acidobacteriota
Luteitalea pratensis DSM 100886; HEG_-6_39 [CP015136]
6873294
6873199
-
SeC(p)
TCA
-
¡û
Identical group No.6133 (3 seq.)
>W1710893865
LNFE01000149
Acidobacteriota
Acidobacteria bacterium Ga0077553 [LNFE]
4768
4674
-
SeC(p)
TCA
[ENA]
¡û
>WENV170712124
LNFM01009911
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
4227
4133
-
SeC(p)
TCA
[ENA]
¢þ
>W1610754131
LNFE01000149
Acidobacteriota
Acidobacteria bacterium Ga0077553 [LNFE]
4768
4674
-
SeC(p)
TCA
[ENA]
¡û
Identical group No.6914 (1 seq.)
>W131179260
ARMF01000009
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1072307
1072401
+
SeC(p)
TCA
[ENA]
¡û
Identical group No.6994 (1 seq.)
>W1910697611
MEKW01000073
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18 [MEKW]
59824
59730
-
Sec
TCA
[ENA]
¡û
Identical group No.6998 (1 seq.)
>W1810047026
OKRG01000094
Acidobacteriota
Acidobacteriia bacterium SbA2 SbA2 Peat soil MAG SbA2 [OKRG]
1529
1623
+
Sec
TCA
[ENA]
¡û
Identical group No.7143 (1 seq.)
>W1810047034
OKRH01000065
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA6 SbA6 Peat soil MAG SbA6 [OKRH]
244
338
+
Sec
TCA
[ENA]
¡û
Identical group No.7460 (1 seq.)
>W1711391190
MEKK01000153
Acidobacteriota
Acidobacteria bacterium RBG_16_68_9 [MEKK]
4746
4840
+
SeC(p)
TCA
[ENA]
¡û
Identical group No.7554 (1 seq.)
>W1910697903
MELF01000015
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 [MELF]
59946
59852
-
Sec
TCA
[ENA]
¡û
Identical group No.7555 (1 seq.)
>W1810047232
OMOG01000267
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
9352
9258
-
Sec
TCA
[ENA]
¡û
Identical group No.7887 (1 seq.)
>C181193289
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
401231
401325
+
SeC
TCA
-
¡û
Identical group No.7888 (1 seq.)
>C181193308
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
5127276
5127370
+
SeC
TCA
-
¡û
Identical group No.8153 (1 seq.)
>W132000193
ARMD01000022
Acidobacteriota
Acidobacteriaceae bacterium KBS 83 [ARMD]
355219
355125
-
seC
TCA
[ENA]
¡û
Identical group No.8734 (1 seq.)
>W1810587128
QFFY01000001
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
309206
309299
+
Sec
TCA
[ENA]
¡û
Identical group No.10613 (2 seq.)
>C024911
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
4117336
4117425
+
SeC
TCA
[Ensembl]
¡û
>W09102602
AAIA01000013
Acidobacteriota
Candidatus Solibacter usitatus Ellin6076 [AAIA]
99836
99743
-
SeC
TCA
[ENA]
¡û
Identical group No.11152 (1 seq.)
>W1750069289
MNGT01000008
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_65_5 [MNGT]
7458
7551
+
SeC
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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