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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
85 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1015654
SRR023846.146237
9363
Alphaproteobacteria
GCT
Ser
>SRA1015924
SRR023846.264539
485713
Alphaproteobacteria
CTG
Gln
>SRA1015931
SRR023846.268464
232078
Alphaproteobacteria
CAT
Met
>SRA1015314
SRR023846.13241
232078
Alphaproteobacteria
CAT
Met
>SRA1016222
SRR023846.407411
29874
Alphaproteobacteria
TGA
Ser
>SRA1015894
SRR023846.246944
29874
Alphaproteobacteria
TGA
Ser
>SRA1016502
SRR023846.534024
180024
Alphaproteobacteria
TAC
Val
>SRA1015543
SRR023846.105114
180024
Alphaproteobacteria
TAC
Val
>SRA1016071
SRR023846.337316
400285
Alphaproteobacteria
CAC
Val
>SRA1016474
SRR023846.517298
22052
Alphaproteobacteria
GGA
Ser
>SRA1015825
SRR023846.215393
22052
Alphaproteobacteria
GGA
Ser
>SRA1015334
SRR023846.21787
400246
Alphaproteobacteria
CCC
Gly
>SRA1016286
SRR023846.436351
30689
Alphaproteobacteria
CGA
Ser
>SRA1015822
SRR023846.212004
30689
Alphaproteobacteria
CGA
Ser
>SRA1015353
SRR023846.28956
184444
Alphaproteobacteria
GTG
His
>SRA1016446
SRR023846.499849
195764
Alphaproteobacteria
ACG
Arg
>SRA1016344
SRR023846.460208
195764
Alphaproteobacteria
ACG
Arg
>SRA1016343
SRR023846.459966
195764
Alphaproteobacteria
ACG
Arg
>SRA1016100
SRR023846.349637
195764
Alphaproteobacteria
ACG
Arg
>SRA1015934
SRR023846.269920
195764
Alphaproteobacteria
ACG
Arg
>SRA1015577
SRR023846.117294
195764
Alphaproteobacteria
ACG
Arg
>SRA1015473
SRR023846.77108
195764
Alphaproteobacteria
ACG
Arg
>SRA1016400
SRR023846.479835
282589
Alphaproteobacteria
GGC
Ala
>SRA1016228
SRR023846.409399
282589
Alphaproteobacteria
GGC
Ala
>SRA1015979
SRR023846.292388
284765
Alphaproteobacteria
TGT
Thr
>SRA1016259
SRR023846.423451
282745
Alphaproteobacteria
TAC
Val
>SRA1015649
SRR023846.145519
282745
Alphaproteobacteria
TAC
Val
>SRA1015747
SRR023846.180121
371093
Alphaproteobacteria
TTT
Lys
>SRA1016125
SRR023846.356923
289744
Alphaproteobacteria
CGT
Thr
>SRA1015540
SRR023846.103443
399350
Alphaproteobacteria
TTG
Gln
>SRA1015384
SRR023846.38383
9850
Alphaproteobacteria
GCT
Ser
>SRA1015844
SRR023846.224748
183848
Alphaproteobacteria
CGG
Pro
>SRA1016476
SRR023846.519260
178337
Alphaproteobacteria
GTG
His
>SRA1016157
SRR023846.372779
178337
Alphaproteobacteria
GTG
His
>SRA1015953
SRR023846.281476
178337
Alphaproteobacteria
GTG
His
>SRA1015928
SRR023846.267067
178337
Alphaproteobacteria
GTG
His
>SRA1015715
SRR023846.168087
178337
Alphaproteobacteria
GTG
His
>SRA1015544
SRR023846.105128
178337
Alphaproteobacteria
GTG
His
>SRA1016531
SRR023846.545059
482902
Alphaproteobacteria
TCC
Gly
>SRA1016258
SRR023846.422948
482902
Alphaproteobacteria
TCC
Gly
>SRA1016174
SRR023846.379156
482902
Alphaproteobacteria
TCC
Gly
>SRA1016173
SRR023846.378591
482902
Alphaproteobacteria
TCC
Gly
>SRA1016167
SRR023846.377201
482902
Alphaproteobacteria
TCC
Gly
>SRA1015740
SRR023846.177278
482902
Alphaproteobacteria
TCC
Gly
>SRA1015477
SRR023846.78296
284697
Alphaproteobacteria
GAA
Phe
>SRA1015435
SRR023846.56176
284697
Alphaproteobacteria
GAA
Phe
>SRA1016515
SRR023846.540050
366782
Alphaproteobacteria
CAT
Met
>SRA1016465
SRR023846.511842
366782
Alphaproteobacteria
CAT
Met
>SRA1016351
SRR023846.461284
366782
Alphaproteobacteria
CAT
Met
>SRA1016079
SRR023846.339621
366782
Alphaproteobacteria
CAT
Met
>SRA1016006
SRR023846.306440
366782
Alphaproteobacteria
CAT
Met
>SRA1015901
SRR023846.249003
366782
Alphaproteobacteria
CAT
Met
>SRA1015778
SRR023846.195744
366782
Alphaproteobacteria
CAT
Met
>SRA1016144
SRR023846.367182
494510
Alphaproteobacteria
CTG
Gln
>SRA1015451
SRR023846.63323
282749
Alphaproteobacteria
CGC
Ala
>SRA1015465
SRR023846.70180
304182
Alphaproteobacteria
CTT
Lys
>SRA1016419
SRR023846.488727
284829
Alphaproteobacteria
GAA
Phe
>SRA1015807
SRR023846.207793
284829
Alphaproteobacteria
GAA
Phe
>SRA1015632
SRR023846.138596
284829
Alphaproteobacteria
GAA
Phe
>SRA1016040
SRR023846.320228
400223
Alphaproteobacteria
GGT
Thr
>SRA1016303
SRR023846.441934
176225
Alphaproteobacteria
TGG
Pro
>SRA1016168
SRR023846.377396
176225
Alphaproteobacteria
TGG
Pro
>SRA1016459
SRR023846.508664
282872
Alphaproteobacteria
CCA
Trp
>SRA1016334
SRR023846.456861
282872
Alphaproteobacteria
CCA
Trp
>SRA1016354
SRR023846.461743
293962
Alphaproteobacteria
GTT
Asn
>SRA1016192
SRR023846.392926
293962
Alphaproteobacteria
GTT
Asn
>SRA1015942
SRR023846.274914
293962
Alphaproteobacteria
GTT
Asn
>SRA1015292
SRR023846.1653
293962
Alphaproteobacteria
GTT
Asn
>SRA1016083
SRR023846.341737
140807
Alphaproteobacteria
GAG
Leu
>SRA1016252
SRR023846.419227
480904
Alphaproteobacteria
CTG
Gln
>SRA1016067
SRR023846.335300
480904
Alphaproteobacteria
CTG
Gln
>SRA1015917
SRR023846.260304
480904
Alphaproteobacteria
CTG
Gln
>SRA1015578
SRR023846.117430
480904
Alphaproteobacteria
CTG
Gln
>SRA1015535
SRR023846.101595
480904
Alphaproteobacteria
CTG
Gln
>SRA1016422
SRR023846.489436
401056
Alphaproteobacteria
TTC
Glu
>SRA1015533
SRR023846.101278
401056
Alphaproteobacteria
TTC
Glu
>SRA1016513
SRR023846.539317
178339
Alphaproteobacteria
CCG
Arg
>SRA1016402
SRR023846.481403
178339
Alphaproteobacteria
CCG
Arg
>SRA1016224
SRR023846.408631
178339
Alphaproteobacteria
CCG
Arg
>SRA1016206
SRR023846.402734
178339
Alphaproteobacteria
CCG
Arg
>SRA1015433
SRR023846.55660
178339
Alphaproteobacteria
CCG
Arg
>SRA1016115
SRR023846.353221
444586
Alphaproteobacteria
TTC
Glu
>SRA1015955
SRR023846.282969
444586
Alphaproteobacteria
TTC
Glu
>SRA1015580
SRR023846.117646
444586
Alphaproteobacteria
TTC
Glu
>SRA1015391
SRR023846.40264
444586
Alphaproteobacteria
TTC
Glu
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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