This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
162 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1005383
SRR006907.230178
44873
Gammaproteobacteria
TGA
Ser
>SRA1005226
SRR006907.122924
338234
Gammaproteobacteria
GAC
Val
>SRA1005198
SRR006907.97317
253766
Gammaproteobacteria
TTT
Lys
>SRA1005395
SRR006907.243859
253766
Gammaproteobacteria
TTT
Lys
>SRA1005353
SRR006907.201460
235341
Gammaproteobacteria
TGT
Thr
>SRA1004698
SRR006906.106276
16245
Gammaproteobacteria
TGA
Ser
>SRA1004726
SRR006906.114851
16245
Gammaproteobacteria
TGA
Ser
>SRA1004767
SRR006906.131745
16245
Gammaproteobacteria
TGA
Ser
>SRA1004769
SRR006906.131834
16245
Gammaproteobacteria
TGA
Ser
>SRA1004898
SRR006906.176060
16245
Gammaproteobacteria
TGA
Ser
>SRA1004905
SRR006906.177168
16245
Gammaproteobacteria
TGA
Ser
>SRA1004909
SRR006906.181083
16245
Gammaproteobacteria
TGA
Ser
>SRA1004915
SRR006906.183708
16245
Gammaproteobacteria
TGA
Ser
>SRA1004868
SRR006906.166289
320203
Gammaproteobacteria
GTC
Asp
>SRA1004443
SRR006906.31469
235488
Gammaproteobacteria
TAC
Val
>SRA1004552
SRR006906.66958
235488
Gammaproteobacteria
TAC
Val
>SRA1004784
SRR006906.136526
235488
Gammaproteobacteria
TAC
Val
>SRA1004832
SRR006906.155335
235488
Gammaproteobacteria
TAC
Val
>SRA1004881
SRR006906.169449
235488
Gammaproteobacteria
TAC
Val
>SRA1004945
SRR006906.192813
235488
Gammaproteobacteria
TAC
Val
>SRA1005003
SRR006906.219801
235488
Gammaproteobacteria
TAC
Val
>SRA1005037
SRR006906.235273
235488
Gammaproteobacteria
TAC
Val
>SRA1005047
SRR006906.239545
235488
Gammaproteobacteria
TAC
Val
>SRA1004612
SRR006906.84071
144917
Gammaproteobacteria
>SRA1004913
SRR006906.183334
144917
Gammaproteobacteria
>SRA1004415
SRR006906.25694
309243
Gammaproteobacteria
GTT
Asn
>SRA1004608
SRR006906.83243
309243
Gammaproteobacteria
GTT
Asn
>SRA1005063
SRR006906.248861
309243
Gammaproteobacteria
GTT
Asn
>SRA1004822
SRR006906.147973
144756
Gammaproteobacteria
TCT
Arg
>SRA1004895
SRR006906.175357
144756
Gammaproteobacteria
TCT
Arg
>SRA1004942
SRR006906.190279
144756
Gammaproteobacteria
TCT
Arg
>SRA1004944
SRR006906.190686
144756
Gammaproteobacteria
TCT
Arg
>SRA1004984
SRR006906.209329
144756
Gammaproteobacteria
TCT
Arg
>SRA1004988
SRR006906.210913
144756
Gammaproteobacteria
TCT
Arg
>SRA1004427
SRR006906.28483
95725
Gammaproteobacteria
CAA
Leu
>SRA1004657
SRR006906.95702
189760
Gammaproteobacteria
TGG
Pro
>SRA1004751
SRR006906.123664
189760
Gammaproteobacteria
TGG
Pro
>SRA1004366
SRR006906.12110
237714
Gammaproteobacteria
TAC
Val
>SRA1004627
SRR006906.88835
237714
Gammaproteobacteria
TAC
Val
>SRA1004719
SRR006906.112865
235319
Gammaproteobacteria
TAC
Val
>SRA1004425
SRR006906.27421
73589
Gammaproteobacteria
CAG
Leu
>SRA1004685
SRR006906.102390
73589
Gammaproteobacteria
CAG
Leu
>SRA1004967
SRR006906.201971
73589
Gammaproteobacteria
CAG
Leu
>SRA1004557
SRR006906.68276
315638
Gammaproteobacteria
TAC
Val
>SRA1004616
SRR006906.86394
249887
Gammaproteobacteria
GGT
Thr
>SRA1004556
SRR006906.67437
235449
Gammaproteobacteria
>SRA1004560
SRR006906.68491
235449
Gammaproteobacteria
>SRA1004589
SRR006906.77610
235449
Gammaproteobacteria
>SRA1004613
SRR006906.84525
235449
Gammaproteobacteria
>SRA1004702
SRR006906.106479
235449
Gammaproteobacteria
>SRA1004880
SRR006906.169171
235449
Gammaproteobacteria
>SRA1004954
SRR006906.196522
235449
Gammaproteobacteria
>SRA1004548
SRR006906.64823
235449
Gammaproteobacteria
>SRA1004553
SRR006906.67215
235449
Gammaproteobacteria
>SRA1004455
SRR006906.36170
145335
Gammaproteobacteria
GGG
Pro
>SRA1004660
SRR006906.96168
338224
Gammaproteobacteria
TTG
Gln
>SRA1004570
SRR006906.71846
108266
Gammaproteobacteria
GTA
Tyr
>SRA1004889
SRR006906.173815
108266
Gammaproteobacteria
GTA
Tyr
>SRA1004474
SRR006906.42613
80625
Gammaproteobacteria
TAA
Leu
>SRA1004405
SRR006906.22014
37101
Gammaproteobacteria
GGA
Ser
>SRA1004534
SRR006906.60369
37101
Gammaproteobacteria
GGA
Ser
>SRA1004755
SRR006906.124788
339945
Gammaproteobacteria
TTG
Gln
>SRA1004802
SRR006906.142799
339945
Gammaproteobacteria
TTG
Gln
>SRA1004392
SRR006906.18750
59175
Gammaproteobacteria
CAG
Leu
>SRA1004416
SRR006906.25744
59175
Gammaproteobacteria
CAG
Leu
>SRA1004605
SRR006906.82607
59175
Gammaproteobacteria
CAG
Leu
>SRA1004620
SRR006906.87489
59175
Gammaproteobacteria
CAG
Leu
>SRA1004859
SRR006906.164724
59175
Gammaproteobacteria
CAG
Leu
>SRA1004788
SRR006906.137862
199859
Gammaproteobacteria
CAT
Met
>SRA1004530
SRR006906.59271
235486
Gammaproteobacteria
GTT
Asn
>SRA1004664
SRR006906.96958
235486
Gammaproteobacteria
GTT
Asn
>SRA1005011
SRR006906.221770
163758
Gammaproteobacteria
TCT
Arg
>SRA1005030
SRR006906.231858
163758
Gammaproteobacteria
TCT
Arg
>SRA1004588
SRR006906.77610
195299
Gammaproteobacteria
CAT
Met
>SRA1004701
SRR006906.106479
195299
Gammaproteobacteria
CAT
Met
>SRA1004733
SRR006906.117921
340342
Gammaproteobacteria
TTG
Gln
>SRA1004787
SRR006906.137653
340342
Gammaproteobacteria
TTG
Gln
>SRA1004960
SRR006906.199131
340342
Gammaproteobacteria
TTG
Gln
>SRA1004878
SRR006906.169109
254612
Gammaproteobacteria
CAT
Met
>SRA1004648
SRR006906.93967
147053
Gammaproteobacteria
GTT
Asn
>SRA1004776
SRR006906.134549
147053
Gammaproteobacteria
GTT
Asn
>SRA1004431
SRR006906.29849
162284
Gammaproteobacteria
CCA
Trp
>SRA1004543
SRR006906.63840
162284
Gammaproteobacteria
CCA
Trp
>SRA1004594
SRR006906.79791
162284
Gammaproteobacteria
CCA
Trp
>SRA1004771
SRR006906.132046
162284
Gammaproteobacteria
CCA
Trp
>SRA1004791
SRR006906.137997
162284
Gammaproteobacteria
CCA
Trp
>SRA1004799
SRR006906.140728
162284
Gammaproteobacteria
CCA
Trp
>SRA1004580
SRR006906.76299
110372
Gammaproteobacteria
GTA
Tyr
>SRA1004641
SRR006906.93023
147778
Gammaproteobacteria
GGG
Pro
>SRA1004707
SRR006906.108967
147778
Gammaproteobacteria
GGG
Pro
>SRA1004506
SRR006906.53677
145522
Gammaproteobacteria
CCG
Arg
>SRA1004724
SRR006906.114484
145522
Gammaproteobacteria
CCG
Arg
>SRA1004879
SRR006906.169171
432040
Gammaproteobacteria
GCA
Cys
>SRA1004953
SRR006906.196522
432040
Gammaproteobacteria
GCA
Cys
>SRA1004470
SRR006906.41424
52727
Gammaproteobacteria
GGA
Ser
>SRA1004845
SRR006906.160875
153036
Gammaproteobacteria
CCT
Arg
>SRA1005048
SRR006906.239951
153036
Gammaproteobacteria
CCT
Arg
>SRA1004483
SRR006906.46432
289927
Gammaproteobacteria
GAA
Phe
>SRA1004891
SRR006906.174124
289927
Gammaproteobacteria
GAA
Phe
>SRA1005016
SRR006906.224296
289927
Gammaproteobacteria
GAA
Phe
>SRA1004377
SRR006906.16502
6883
Gammaproteobacteria
GCT
Ser
>SRA1004402
SRR006906.21192
339614
Gammaproteobacteria
TTT
Lys
>SRA1004472
SRR006906.42039
163555
Gammaproteobacteria
TCT
Arg
>SRA1004794
SRR006906.138271
163555
Gammaproteobacteria
TCT
Arg
>SRA1004576
SRR006906.75136
106214
Gammaproteobacteria
TAG
Leu
>SRA1004756
SRR006906.124788
106214
Gammaproteobacteria
TAG
Leu
>SRA1004803
SRR006906.142799
106214
Gammaproteobacteria
TAG
Leu
>SRA1004894
SRR006906.175199
106214
Gammaproteobacteria
TAG
Leu
>SRA1004559
SRR006906.68441
113619
Gammaproteobacteria
>SRA1004695
SRR006906.105304
113619
Gammaproteobacteria
>SRA1004684
SRR006906.102094
20938
Gammaproteobacteria
TGA
Ser
>SRA1005032
SRR006906.233229
20938
Gammaproteobacteria
TGA
Ser
>SRA1004840
SRR006906.159835
343529
Gammaproteobacteria
CCG
Arg
>SRA1004906
SRR006906.178157
343529
Gammaproteobacteria
CCG
Arg
>SRA1004903
SRR006906.176520
253713
Gammaproteobacteria
TTC
Glu
>SRA1004381
SRR006906.17003
295745
Gammaproteobacteria
TGT
Thr
>SRA1004711
SRR006906.110888
295745
Gammaproteobacteria
TGT
Thr
>SRA1004797
SRR006906.140259
295745
Gammaproteobacteria
TGT
Thr
>SRA1004804
SRR006906.142864
295745
Gammaproteobacteria
TGT
Thr
>SRA1004982
SRR006906.207421
295745
Gammaproteobacteria
TGT
Thr
>SRA1005039
SRR006906.236529
295745
Gammaproteobacteria
TGT
Thr
>SRA1004391
SRR006906.18385
75381
Gammaproteobacteria
CAG
Leu
>SRA1004519
SRR006906.57772
75381
Gammaproteobacteria
CAG
Leu
>SRA1004683
SRR006906.102003
75381
Gammaproteobacteria
CAG
Leu
>SRA1004808
SRR006906.143357
75381
Gammaproteobacteria
CAG
Leu
>SRA1004968
SRR006906.201971
75381
Gammaproteobacteria
CAG
Leu
>SRA1004541
SRR006906.63547
41425
Gammaproteobacteria
CGA
Ser
>SRA1004538
SRR006906.61545
52367
Gammaproteobacteria
TGA
Ser
>SRA1004546
SRR006906.64360
203169
Gammaproteobacteria
GAC
Val
>SRA1004809
SRR006906.143665
203169
Gammaproteobacteria
GAC
Val
>SRA1004673
SRR006906.99314
237708
Gammaproteobacteria
GCC
Gly
>SRA1004393
SRR006906.18750
396552
Gammaproteobacteria
TTG
Gln
>SRA1004417
SRR006906.25744
396552
Gammaproteobacteria
TTG
Gln
>SRA1004606
SRR006906.82607
396552
Gammaproteobacteria
TTG
Gln
>SRA1004621
SRR006906.87489
396552
Gammaproteobacteria
TTG
Gln
>SRA1004777
SRR006906.134883
396552
Gammaproteobacteria
TTG
Gln
>SRA1004783
SRR006906.136336
396552
Gammaproteobacteria
TTG
Gln
>SRA1004860
SRR006906.164724
396552
Gammaproteobacteria
TTG
Gln
>SRA1004955
SRR006906.197527
396552
Gammaproteobacteria
TTG
Gln
>SRA1004562
SRR006906.68775
240084
Gammaproteobacteria
GGT
Thr
>SRA1004766
SRR006906.130419
240084
Gammaproteobacteria
GGT
Thr
>SRA1005010
SRR006906.221565
195986
Gammaproteobacteria
GAC
Val
>SRA1004378
SRR006906.16502
144788
Gammaproteobacteria
>SRA1005008
SRR006906.221290
144788
Gammaproteobacteria
>SRA1005055
SRR006906.245119
144788
Gammaproteobacteria
>SRA1004680
SRR006906.100788
107081
Gammaproteobacteria
TAG
Leu
>SRA1004961
SRR006906.199131
144784
Gammaproteobacteria
CAT
Met
>SRA1004661
SRR006906.96168
144784
Gammaproteobacteria
CAT
Met
>SRA1004838
SRR006906.158672
58760
Gammaproteobacteria
>SRA1004656
SRR006906.95702
235824
Gammaproteobacteria
GTG
His
>SRA1004718
SRR006906.112193
235824
Gammaproteobacteria
GTG
His
>SRA1004750
SRR006906.123664
235824
Gammaproteobacteria
GTG
His
>SRA1004672
SRR006906.98997
411729
Gammaproteobacteria
>SRA1004729
SRR006906.115542
411729
Gammaproteobacteria
>SRA1004745
SRR006906.121284
411729
Gammaproteobacteria
>SRA1004883
SRR006906.170449
411729
Gammaproteobacteria
>SRA1004962
SRR006906.199776
292015
Gammaproteobacteria
GAA
Phe
>SRA1004601
SRR006906.81730
235453
Gammaproteobacteria
GAA
Phe
>SRA1004762
SRR006906.128012
235453
Gammaproteobacteria
GAA
Phe
>SRA1004795
SRR006906.139082
235453
Gammaproteobacteria
GAA
Phe
>SRA1004901
SRR006906.176391
235453
Gammaproteobacteria
GAA
Phe
>SRA1004499
SRR006906.51969
235317
Gammaproteobacteria
GGT
Thr
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
BACK