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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
83 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170002939
AGTN01174324
77010
Alphaproteobacteria
GAG
Leu
>WENV170004129
AGTN01571497
195199
Alphaproteobacteria
GTC
Asp
>WENV170002776
AGTN01125253
482973
Alphaproteobacteria
TCC
Gly
>WENV170004420
AGTN01673123
482973
Alphaproteobacteria
TCC
Gly
>WENV170003672
AGTN01413771
121655
Alphaproteobacteria
TAG
Leu
>WENV170003614
AGTN01397045
481048
Alphaproteobacteria
GCA
Cys
>WENV170004163
AGTN01584019
481048
Alphaproteobacteria
GCA
Cys
>WENV170004452
AGTN01683384
400216
Alphaproteobacteria
TTG
Gln
>WENV170004282
AGTN01627960
283076
Alphaproteobacteria
TAC
Val
>WENV170004076
AGTN01554024
481305
Alphaproteobacteria
CTG
Gln
>WENV170002471
AGTN01040859
320067
Alphaproteobacteria
CGC
Ala
>WENV170003500
AGTN01359637
320067
Alphaproteobacteria
CGC
Ala
>WENV170003822
AGTN01461294
283559
Alphaproteobacteria
CGC
Ala
>WENV170003639
AGTN01403158
406803
Alphaproteobacteria
TTG
Gln
>WENV170003674
AGTN01414337
183975
Alphaproteobacteria
GTC
Asp
>WENV170002431
AGTN01028470
180177
Alphaproteobacteria
CCT
Arg
>WENV170003036
AGTN01206985
180177
Alphaproteobacteria
CCT
Arg
>WENV170003940
AGTN01508422
282966
Alphaproteobacteria
TTT
Lys
>WENV170002869
AGTN01154382
32175
Alphaproteobacteria
TGA
Ser
>WENV170002384
AGTN01014042
284697
Alphaproteobacteria
GAA
Phe
>WENV170002373
AGTN01011325
6092
Alphaproteobacteria
GCT
Ser
>WENV170003508
AGTN01362379
184448
Alphaproteobacteria
ACG
Arg
>WENV170003253
AGTN01275872
165016
Alphaproteobacteria
CCA
Trp
>WENV170003232
AGTN01267107
399237
Alphaproteobacteria
TAC
Val
>WENV170002773
AGTN01124702
193088
Alphaproteobacteria
GAT
Ile
>WENV170004190
AGTN01595332
308662
Alphaproteobacteria
GAA
Phe
>WENV170004351
AGTN01650328
118549
Alphaproteobacteria
CAG
Leu
>WENV170004405
AGTN01669891
401850
Alphaproteobacteria
TTG
Gln
>WENV170003510
AGTN01363334
282748
Alphaproteobacteria
CGT
Thr
>WENV170002836
AGTN01143933
403836
Alphaproteobacteria
>WENV170003315
AGTN01295197
399340
Alphaproteobacteria
GTT
Asn
>WENV170004278
AGTN01626157
197988
Alphaproteobacteria
ACG
Arg
>WENV170003526
AGTN01367344
287439
Alphaproteobacteria
CCA
Trp
>WENV170002545
AGTN01063575
157150
Alphaproteobacteria
GGG
Pro
>WENV170003463
AGTN01343542
355040
Alphaproteobacteria
CTT
Lys
>WENV170003114
AGTN01230111
118277
Alphaproteobacteria
TAG
Leu
>WENV170003573
AGTN01380532
454954
Alphaproteobacteria
CAC
Val
>WENV170003651
AGTN01405940
454954
Alphaproteobacteria
CAC
Val
>WENV170004042
AGTN01544070
427571
Alphaproteobacteria
GCC
Gly
>WENV170003240
AGTN01271070
196701
Alphaproteobacteria
TGG
Pro
>WENV170002381
AGTN01013599
348750
Alphaproteobacteria
CAT
Met
>WENV170003069
AGTN01217278
436046
Alphaproteobacteria
GAC
Val
>WENV170003163
AGTN01246958
481074
Alphaproteobacteria
TCC
Gly
>WENV170003778
AGTN01447842
400186
Alphaproteobacteria
GTT
Asn
>WENV170004360
AGTN01657302
210541
Alphaproteobacteria
CAT
Met
>WENV170003553
AGTN01372873
210541
Alphaproteobacteria
CAT
Met
>WENV170002928
AGTN01171562
210541
Alphaproteobacteria
CAT
Met
>WENV170002387
AGTN01014982
210541
Alphaproteobacteria
CAT
Met
>WENV170002755
AGTN01119903
209311
Alphaproteobacteria
ACG
Arg
>WENV170004116
AGTN01565027
209311
Alphaproteobacteria
ACG
Arg
>WENV170003989
AGTN01527221
404744
Alphaproteobacteria
GCC
Gly
>WENV170002655
AGTN01093629
402067
Alphaproteobacteria
GCC
Gly
>WENV170003927
AGTN01504234
398980
Alphaproteobacteria
GAC
Val
>WENV170004111
AGTN01563449
229804
Alphaproteobacteria
GTC
Asp
>WENV170002671
AGTN01097395
176634
Alphaproteobacteria
CGG
Pro
>WENV170003347
AGTN01306474
283022
Alphaproteobacteria
CTT
Lys
>WENV170002606
AGTN01081945
281232
Alphaproteobacteria
GTT
Asn
>WENV170003949
AGTN01511467
281232
Alphaproteobacteria
GTT
Asn
>WENV170002439
AGTN01029961
225276
Alphaproteobacteria
GAT
Ile
>WENV170004306
AGTN01632295
334158
Alphaproteobacteria
CTT
Lys
>WENV170003486
AGTN01352254
73747
Alphaproteobacteria
CAG
Leu
>WENV170004067
AGTN01549928
281238
Alphaproteobacteria
CAT
Met
>WENV170004265
AGTN01620683
76550
Alphaproteobacteria
CAG
Leu
>WENV170003047
AGTN01210038
350583
Alphaproteobacteria
TAC
Val
>WENV170003434
AGTN01331980
350583
Alphaproteobacteria
TAC
Val
>WENV170003965
AGTN01517635
350583
Alphaproteobacteria
TAC
Val
>WENV170003633
AGTN01401761
233665
Alphaproteobacteria
CCT
Arg
>WENV170004019
AGTN01537553
176633
Alphaproteobacteria
GAT
Ile
>WENV170003785
AGTN01450763
176633
Alphaproteobacteria
GAT
Ile
>WENV170002989
AGTN01186193
399408
Alphaproteobacteria
TGT
Thr
>WENV170004052
AGTN01546796
480900
Alphaproteobacteria
GCA
Cys
>WENV170003610
AGTN01396550
480900
Alphaproteobacteria
GCA
Cys
>WENV170003076
AGTN01221822
118550
Alphaproteobacteria
GAG
Leu
>WENV170002831
AGTN01141910
403890
Alphaproteobacteria
GAC
Val
>WENV170002821
AGTN01139326
180027
Alphaproteobacteria
CAT
Met
>WENV170003433
AGTN01331913
176635
Alphaproteobacteria
CCT
Arg
>WENV170003066
AGTN01216180
195438
Alphaproteobacteria
GAT
Ile
>WENV170004206
AGTN01600960
480507
Alphaproteobacteria
GCA
Cys
>WENV170002519
AGTN01057876
332802
Alphaproteobacteria
GGC
Ala
>WENV170002690
AGTN01101739
73523
Alphaproteobacteria
CAG
Leu
>WENV170004109
AGTN01563236
73523
Alphaproteobacteria
CAG
Leu
>WENV170002440
AGTN01029961
352375
Alphaproteobacteria
TGC
Ala
>WENV170003343
AGTN01305540
352375
Alphaproteobacteria
TGC
Ala
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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