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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
183 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1015654
SRR023846.146237
9363
Alphaproteobacteria
GCT
Ser
>SRA1015103
SRR023845.461883
9363
Alphaproteobacteria
GCT
Ser
>SRA1015924
SRR023846.264539
485713
Alphaproteobacteria
CTG
Gln
>SRA1014548
SRR023845.193770
485713
Alphaproteobacteria
CTG
Gln
>SRA1015931
SRR023846.268464
232078
Alphaproteobacteria
CAT
Met
>SRA1015314
SRR023846.13241
232078
Alphaproteobacteria
CAT
Met
>SRA1016222
SRR023846.407411
29874
Alphaproteobacteria
TGA
Ser
>SRA1015894
SRR023846.246944
29874
Alphaproteobacteria
TGA
Ser
>SRA1016502
SRR023846.534024
180024
Alphaproteobacteria
TAC
Val
>SRA1015543
SRR023846.105114
180024
Alphaproteobacteria
TAC
Val
>SRA1016071
SRR023846.337316
400285
Alphaproteobacteria
CAC
Val
>SRA1015244
SRR023845.517270
400285
Alphaproteobacteria
CAC
Val
>SRA1016474
SRR023846.517298
22052
Alphaproteobacteria
GGA
Ser
>SRA1015825
SRR023846.215393
22052
Alphaproteobacteria
GGA
Ser
>SRA1015165
SRR023845.483365
22052
Alphaproteobacteria
GGA
Ser
>SRA1014881
SRR023845.360767
22052
Alphaproteobacteria
GGA
Ser
>SRA1014752
SRR023845.299518
22052
Alphaproteobacteria
GGA
Ser
>SRA1014695
SRR023845.267065
22052
Alphaproteobacteria
GGA
Ser
>SRA1014344
SRR023845.98183
22052
Alphaproteobacteria
GGA
Ser
>SRA1014270
SRR023845.66824
22052
Alphaproteobacteria
GGA
Ser
>SRA1014211
SRR023845.40899
22052
Alphaproteobacteria
GGA
Ser
>SRA1015334
SRR023846.21787
400246
Alphaproteobacteria
CCC
Gly
>SRA1016286
SRR023846.436351
30689
Alphaproteobacteria
CGA
Ser
>SRA1015822
SRR023846.212004
30689
Alphaproteobacteria
CGA
Ser
>SRA1015353
SRR023846.28956
184444
Alphaproteobacteria
GTG
His
>SRA1016446
SRR023846.499849
195764
Alphaproteobacteria
ACG
Arg
>SRA1016344
SRR023846.460208
195764
Alphaproteobacteria
ACG
Arg
>SRA1016343
SRR023846.459966
195764
Alphaproteobacteria
ACG
Arg
>SRA1016100
SRR023846.349637
195764
Alphaproteobacteria
ACG
Arg
>SRA1015934
SRR023846.269920
195764
Alphaproteobacteria
ACG
Arg
>SRA1015577
SRR023846.117294
195764
Alphaproteobacteria
ACG
Arg
>SRA1015473
SRR023846.77108
195764
Alphaproteobacteria
ACG
Arg
>SRA1015247
SRR023845.519248
195764
Alphaproteobacteria
ACG
Arg
>SRA1015112
SRR023845.464400
195764
Alphaproteobacteria
ACG
Arg
>SRA1015108
SRR023845.463803
195764
Alphaproteobacteria
ACG
Arg
>SRA1015107
SRR023845.463803
195764
Alphaproteobacteria
ACG
Arg
>SRA1015043
SRR023845.433965
195764
Alphaproteobacteria
ACG
Arg
>SRA1015032
SRR023845.426310
195764
Alphaproteobacteria
ACG
Arg
>SRA1015013
SRR023845.423620
195764
Alphaproteobacteria
ACG
Arg
>SRA1014939
SRR023845.390992
195764
Alphaproteobacteria
ACG
Arg
>SRA1014849
SRR023845.343118
195764
Alphaproteobacteria
ACG
Arg
>SRA1014806
SRR023845.321104
195764
Alphaproteobacteria
ACG
Arg
>SRA1014798
SRR023845.319092
195764
Alphaproteobacteria
ACG
Arg
>SRA1014709
SRR023845.274457
195764
Alphaproteobacteria
ACG
Arg
>SRA1014708
SRR023845.274457
195764
Alphaproteobacteria
ACG
Arg
>SRA1014455
SRR023845.147632
195764
Alphaproteobacteria
ACG
Arg
>SRA1014316
SRR023845.86860
195764
Alphaproteobacteria
ACG
Arg
>SRA1014306
SRR023845.83324
195764
Alphaproteobacteria
ACG
Arg
>SRA1014180
SRR023845.30025
195764
Alphaproteobacteria
ACG
Arg
>SRA1015073
SRR023845.448435
282589
Alphaproteobacteria
GGC
Ala
>SRA1014609
SRR023845.226132
282589
Alphaproteobacteria
GGC
Ala
>SRA1014492
SRR023845.163759
282589
Alphaproteobacteria
GGC
Ala
>SRA1014442
SRR023845.144308
282589
Alphaproteobacteria
GGC
Ala
>SRA1016400
SRR023846.479835
282589
Alphaproteobacteria
GGC
Ala
>SRA1016228
SRR023846.409399
282589
Alphaproteobacteria
GGC
Ala
>SRA1015286
SRR023845.541943
282589
Alphaproteobacteria
GGC
Ala
>SRA1015979
SRR023846.292388
284765
Alphaproteobacteria
TGT
Thr
>SRA1014791
SRR023845.316637
284765
Alphaproteobacteria
TGT
Thr
>SRA1016259
SRR023846.423451
282745
Alphaproteobacteria
TAC
Val
>SRA1015649
SRR023846.145519
282745
Alphaproteobacteria
TAC
Val
>SRA1015226
SRR023845.506628
282745
Alphaproteobacteria
TAC
Val
>SRA1015094
SRR023845.458361
282745
Alphaproteobacteria
TAC
Val
>SRA1014527
SRR023845.185458
282745
Alphaproteobacteria
TAC
Val
>SRA1014119
SRR023845.7582
282745
Alphaproteobacteria
TAC
Val
>SRA1015747
SRR023846.180121
371093
Alphaproteobacteria
TTT
Lys
>SRA1016125
SRR023846.356923
289744
Alphaproteobacteria
CGT
Thr
>SRA1014311
SRR023845.85090
289744
Alphaproteobacteria
CGT
Thr
>SRA1015540
SRR023846.103443
399350
Alphaproteobacteria
TTG
Gln
>SRA1014533
SRR023845.187457
399350
Alphaproteobacteria
TTG
Gln
>SRA1015384
SRR023846.38383
9850
Alphaproteobacteria
GCT
Ser
>SRA1015844
SRR023846.224748
183848
Alphaproteobacteria
CGG
Pro
>SRA1016476
SRR023846.519260
178337
Alphaproteobacteria
GTG
His
>SRA1016157
SRR023846.372779
178337
Alphaproteobacteria
GTG
His
>SRA1015953
SRR023846.281476
178337
Alphaproteobacteria
GTG
His
>SRA1015928
SRR023846.267067
178337
Alphaproteobacteria
GTG
His
>SRA1015715
SRR023846.168087
178337
Alphaproteobacteria
GTG
His
>SRA1015544
SRR023846.105128
178337
Alphaproteobacteria
GTG
His
>SRA1015139
SRR023845.475151
178337
Alphaproteobacteria
GTG
His
>SRA1015082
SRR023845.453781
178337
Alphaproteobacteria
GTG
His
>SRA1015041
SRR023845.433197
178337
Alphaproteobacteria
GTG
His
>SRA1014684
SRR023845.262927
178337
Alphaproteobacteria
GTG
His
>SRA1014635
SRR023845.235315
178337
Alphaproteobacteria
GTG
His
>SRA1014547
SRR023845.193412
178337
Alphaproteobacteria
GTG
His
>SRA1014312
SRR023845.85094
178337
Alphaproteobacteria
GTG
His
>SRA1016531
SRR023846.545059
482902
Alphaproteobacteria
TCC
Gly
>SRA1016258
SRR023846.422948
482902
Alphaproteobacteria
TCC
Gly
>SRA1016174
SRR023846.379156
482902
Alphaproteobacteria
TCC
Gly
>SRA1016173
SRR023846.378591
482902
Alphaproteobacteria
TCC
Gly
>SRA1016167
SRR023846.377201
482902
Alphaproteobacteria
TCC
Gly
>SRA1015740
SRR023846.177278
482902
Alphaproteobacteria
TCC
Gly
>SRA1015067
SRR023845.446579
482902
Alphaproteobacteria
TCC
Gly
>SRA1014790
SRR023845.316249
482902
Alphaproteobacteria
TCC
Gly
>SRA1014717
SRR023845.278298
482902
Alphaproteobacteria
TCC
Gly
>SRA1014272
SRR023845.66897
482902
Alphaproteobacteria
TCC
Gly
>SRA1014111
SRR023845.4021
482902
Alphaproteobacteria
TCC
Gly
>SRA1015477
SRR023846.78296
284697
Alphaproteobacteria
GAA
Phe
>SRA1015435
SRR023846.56176
284697
Alphaproteobacteria
GAA
Phe
>SRA1015115
SRR023845.465466
284697
Alphaproteobacteria
GAA
Phe
>SRA1014860
SRR023845.348334
284697
Alphaproteobacteria
GAA
Phe
>SRA1014525
SRR023845.181718
284697
Alphaproteobacteria
GAA
Phe
>SRA1016515
SRR023846.540050
366782
Alphaproteobacteria
CAT
Met
>SRA1016465
SRR023846.511842
366782
Alphaproteobacteria
CAT
Met
>SRA1016351
SRR023846.461284
366782
Alphaproteobacteria
CAT
Met
>SRA1016079
SRR023846.339621
366782
Alphaproteobacteria
CAT
Met
>SRA1016006
SRR023846.306440
366782
Alphaproteobacteria
CAT
Met
>SRA1015901
SRR023846.249003
366782
Alphaproteobacteria
CAT
Met
>SRA1015778
SRR023846.195744
366782
Alphaproteobacteria
CAT
Met
>SRA1016144
SRR023846.367182
494510
Alphaproteobacteria
CTG
Gln
>SRA1015451
SRR023846.63323
282749
Alphaproteobacteria
CGC
Ala
>SRA1015465
SRR023846.70180
304182
Alphaproteobacteria
CTT
Lys
>SRA1016419
SRR023846.488727
284829
Alphaproteobacteria
GAA
Phe
>SRA1015807
SRR023846.207793
284829
Alphaproteobacteria
GAA
Phe
>SRA1015632
SRR023846.138596
284829
Alphaproteobacteria
GAA
Phe
>SRA1014505
SRR023845.169933
284829
Alphaproteobacteria
GAA
Phe
>SRA1016040
SRR023846.320228
400223
Alphaproteobacteria
GGT
Thr
>SRA1016303
SRR023846.441934
176225
Alphaproteobacteria
TGG
Pro
>SRA1016168
SRR023846.377396
176225
Alphaproteobacteria
TGG
Pro
>SRA1014141
SRR023845.16132
176225
Alphaproteobacteria
TGG
Pro
>SRA1016459
SRR023846.508664
282872
Alphaproteobacteria
CCA
Trp
>SRA1016334
SRR023846.456861
282872
Alphaproteobacteria
CCA
Trp
>SRA1014336
SRR023845.94116
282872
Alphaproteobacteria
CCA
Trp
>SRA1016354
SRR023846.461743
293962
Alphaproteobacteria
GTT
Asn
>SRA1016192
SRR023846.392926
293962
Alphaproteobacteria
GTT
Asn
>SRA1015942
SRR023846.274914
293962
Alphaproteobacteria
GTT
Asn
>SRA1015292
SRR023846.1653
293962
Alphaproteobacteria
GTT
Asn
>SRA1014337
SRR023845.94447
293962
Alphaproteobacteria
GTT
Asn
>SRA1016083
SRR023846.341737
140807
Alphaproteobacteria
GAG
Leu
>SRA1016252
SRR023846.419227
480904
Alphaproteobacteria
CTG
Gln
>SRA1016067
SRR023846.335300
480904
Alphaproteobacteria
CTG
Gln
>SRA1015917
SRR023846.260304
480904
Alphaproteobacteria
CTG
Gln
>SRA1015578
SRR023846.117430
480904
Alphaproteobacteria
CTG
Gln
>SRA1015535
SRR023846.101595
480904
Alphaproteobacteria
CTG
Gln
>SRA1016422
SRR023846.489436
401056
Alphaproteobacteria
TTC
Glu
>SRA1015533
SRR023846.101278
401056
Alphaproteobacteria
TTC
Glu
>SRA1014197
SRR023845.35526
401056
Alphaproteobacteria
TTC
Glu
>SRA1016513
SRR023846.539317
178339
Alphaproteobacteria
CCG
Arg
>SRA1016402
SRR023846.481403
178339
Alphaproteobacteria
CCG
Arg
>SRA1016224
SRR023846.408631
178339
Alphaproteobacteria
CCG
Arg
>SRA1016206
SRR023846.402734
178339
Alphaproteobacteria
CCG
Arg
>SRA1015433
SRR023846.55660
178339
Alphaproteobacteria
CCG
Arg
>SRA1015135
SRR023845.472873
178339
Alphaproteobacteria
CCG
Arg
>SRA1015097
SRR023845.459061
178339
Alphaproteobacteria
CCG
Arg
>SRA1015011
SRR023845.421866
178339
Alphaproteobacteria
CCG
Arg
>SRA1014980
SRR023845.408711
178339
Alphaproteobacteria
CCG
Arg
>SRA1014603
SRR023845.220906
178339
Alphaproteobacteria
CCG
Arg
>SRA1014556
SRR023845.197854
178339
Alphaproteobacteria
CCG
Arg
>SRA1014463
SRR023845.150953
178339
Alphaproteobacteria
CCG
Arg
>SRA1014444
SRR023845.144546
178339
Alphaproteobacteria
CCG
Arg
>SRA1014330
SRR023845.91857
178339
Alphaproteobacteria
CCG
Arg
>SRA1014129
SRR023845.10661
178339
Alphaproteobacteria
CCG
Arg
>SRA1016115
SRR023846.353221
444586
Alphaproteobacteria
TTC
Glu
>SRA1015955
SRR023846.282969
444586
Alphaproteobacteria
TTC
Glu
>SRA1015580
SRR023846.117646
444586
Alphaproteobacteria
TTC
Glu
>SRA1015391
SRR023846.40264
444586
Alphaproteobacteria
TTC
Glu
>SRA1015213
SRR023845.500631
188085
Alphaproteobacteria
GTC
Asp
>SRA1014297
SRR023845.79126
400249
Alphaproteobacteria
GCC
Gly
>SRA1014736
SRR023845.288735
176232
Alphaproteobacteria
TCT
Arg
>SRA1014826
SRR023845.331886
219129
Alphaproteobacteria
CCA
Trp
>SRA1014816
SRR023845.325393
310632
Alphaproteobacteria
TGT
Thr
>SRA1014268
SRR023845.66785
8684
Alphaproteobacteria
GCT
Ser
>SRA1014951
SRR023845.395323
283601
Alphaproteobacteria
CGT
Thr
>SRA1015233
SRR023845.511108
289463
Alphaproteobacteria
CAT
Met
>SRA1015193
SRR023845.495130
289463
Alphaproteobacteria
CAT
Met
>SRA1014464
SRR023845.151084
289463
Alphaproteobacteria
CAT
Met
>SRA1014356
SRR023845.100544
289463
Alphaproteobacteria
CAT
Met
>SRA1014152
SRR023845.20643
289463
Alphaproteobacteria
CAT
Met
>SRA1015243
SRR023845.516779
289945
Alphaproteobacteria
TTC
Glu
>SRA1014833
SRR023845.334835
399340
Alphaproteobacteria
GTT
Asn
>SRA1014239
SRR023845.50393
399340
Alphaproteobacteria
GTT
Asn
>SRA1014694
SRR023845.267044
118092
Alphaproteobacteria
CAA
Leu
>SRA1014564
SRR023845.201923
34670
Alphaproteobacteria
CGA
Ser
>SRA1014872
SRR023845.355022
399001
Alphaproteobacteria
GAC
Val
>SRA1014324
SRR023845.89083
180027
Alphaproteobacteria
CAT
Met
>SRA1014273
SRR023845.67666
209311
Alphaproteobacteria
ACG
Arg
>SRA1015053
SRR023845.441448
283076
Alphaproteobacteria
TAC
Val
>SRA1015092
SRR023845.457281
176233
Alphaproteobacteria
>SRA1015218
SRR023845.503079
118100
Alphaproteobacteria
GTA
Tyr
>SRA1014878
SRR023845.359996
118100
Alphaproteobacteria
GTA
Tyr
>SRA1014350
SRR023845.98930
118100
Alphaproteobacteria
GTA
Tyr
>SRA1014646
SRR023845.239501
493260
Alphaproteobacteria
GCA
Cys
>SRA1015271
SRR023845.532807
178062
Alphaproteobacteria
CAT
Met
>SRA1014204
SRR023845.38072
284764
Alphaproteobacteria
CAT
Met
>SRA1014966
SRR023845.400879
178369
Alphaproteobacteria
CGG
Pro
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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