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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
103 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170716536
LSQX01002627
147814
Euryarchaeota
TTT
Lys
>WENV170716605
LSQX01005169
147814
Euryarchaeota
TTT
Lys
>WENV170716607
LSQX01005169
45268
Euryarchaeota
CGA
Ser
>WENV170716793
LSQX01011899
238541
Euryarchaeota
GTT
Asn
>WENV170716822
LSQX01012957
339971
Euryarchaeota
GCC
Gly
>WENV170716992
LSQX01019761
81000
Euryarchaeota
CAA
Leu
>WENV170717170
LSQX01026917
80999
Euryarchaeota
GGA
Ser
>WENV170717177
LSQX01027200
147813
Euryarchaeota
>WENV170717344
LSQX01032445
59292
Euryarchaeota
GAG
Leu
>WENV170717402
LSQX01034387
127582
Euryarchaeota
CAT
Met
>WENV170717474
LSQX01036433
127187
Euryarchaeota
>WENV170717644
LSQX01044280
127582
Euryarchaeota
CAT
Met
>WENV170717693
LSQX01046064
339957
Euryarchaeota
GGC
Ala
>WENV170717744
LSQX01047781
147809
Euryarchaeota
TGT
Thr
>WENV170717948
LSQX01055462
45267
Euryarchaeota
GCT
Ser
>WENV170718285
LSQX01069367
128076
Euryarchaeota
GAT
Ile
>WENV170718411
LSQX01074624
339967
Euryarchaeota
GCA
Cys
>WENV170718558
LSQX01081481
127582
Euryarchaeota
CAT
Met
>WENV170718700
LSQX01087281
45268
Euryarchaeota
CGA
Ser
>WENV170718722
LSQX01088206
47031
Euryarchaeota
TGA
Ser
>WENV170718725
LSQX01088507
129630
Euryarchaeota
CAT
Met
>WENV170718778
LSQX01090388
348437
Euryarchaeota
GCG
Arg
>WENV170718883
LSQX01093623
339967
Euryarchaeota
GCA
Cys
>WENV170719084
LSQX01102042
411995
Euryarchaeota
TCC
Gly
>WENV170719233
LSQX01106761
238541
Euryarchaeota
GTT
Asn
>WENV170719355
LSQX01111933
238541
Euryarchaeota
GTT
Asn
>WENV170719405
LSQX01113396
147812
Euryarchaeota
TAC
Val
>WENV170719624
LSQX01120940
127188
Euryarchaeota
TCT
Arg
>WENV170719635
LSQX01121153
238531
Euryarchaeota
GTT
Asn
>WENV170719925
LSQX01134003
129125
Euryarchaeota
GGG
Pro
>WENV170720043
LSQX01138434
147809
Euryarchaeota
TGT
Thr
>WENV170720143
LSQX01142873
147810
Euryarchaeota
CTT
Lys
>WENV170720226
LSQX01145279
123294
Euryarchaeota
TCG
Arg
>WENV170720375
LSQX01151218
339971
Euryarchaeota
GCC
Gly
>WENV170720395
LSQX01151725
238533
Euryarchaeota
TTG
Gln
>WENV170720399
LSQX01151826
253779
Euryarchaeota
>WENV170720522
LSQX01156421
130311
Euryarchaeota
TTC
Glu
>WENV170720705
LSQX01162923
127186
Euryarchaeota
>WENV170721276
LSQX01184439
411995
Euryarchaeota
TCC
Gly
>WENV170721346
LSQX01186851
147815
Euryarchaeota
CAC
Val
>WENV170721345
LSQX01186851
411995
Euryarchaeota
TCC
Gly
>WENV170721386
LSQX01188196
366738
Euryarchaeota
GCC
Gly
>WENV170721382
LSQX01188196
147813
Euryarchaeota
>WENV170721384
LSQX01188196
147813
Euryarchaeota
>WENV170721383
LSQX01188196
339964
Euryarchaeota
GAA
Phe
>WENV170721385
LSQX01188196
339964
Euryarchaeota
GAA
Phe
>WENV170721684
LSQX01200275
339960
Euryarchaeota
CCC
Gly
>WENV170722238
LSQX01222309
45267
Euryarchaeota
GCT
Ser
>WENV170722351
LSQX01226309
241681
Euryarchaeota
TGC
Ala
>WENV170722516
LSQX01232629
349722
Euryarchaeota
>WENV170722517
LSQX01232629
349722
Euryarchaeota
>WENV170722558
LSQX01233714
339971
Euryarchaeota
GCC
Gly
>WENV170722589
LSQX01234693
310214
Euryarchaeota
GTC
Asp
>WENV170722825
LSQX01244681
147813
Euryarchaeota
>WENV170722828
LSQX01245024
238541
Euryarchaeota
GTT
Asn
>WENV170722860
LSQX01246472
45256
Euryarchaeota
GCT
Ser
>WENV170723000
LSQX01250951
45268
Euryarchaeota
CGA
Ser
>WENV170723033
LSQX01252654
411995
Euryarchaeota
TCC
Gly
>WENV170723176
LSQX01257633
50437
Euryarchaeota
TAG
Leu
>WENV170723175
LSQX01257633
127184
Euryarchaeota
CTC
Glu
>WENV170723268
LSQX01262251
59343
Euryarchaeota
CGA
Ser
>WENV170723357
LSQX01265832
238531
Euryarchaeota
GTT
Asn
>WENV170723359
LSQX01265832
238531
Euryarchaeota
GTT
Asn
>WENV170723358
LSQX01265832
127185
Euryarchaeota
CAT
Met
>WENV170723413
LSQX01267450
147814
Euryarchaeota
TTT
Lys
>WENV170723576
LSQX01273894
173325
Euryarchaeota
TTT
Lys
>WENV170723861
LSQX01283842
147813
Euryarchaeota
>WENV170723859
LSQX01283842
339964
Euryarchaeota
GAA
Phe
>WENV170723860
LSQX01283842
339956
Euryarchaeota
GCC
Gly
>WENV170723928
LSQX01285760
127188
Euryarchaeota
TCT
Arg
>WENV170723981
LSQX01287837
238535
Euryarchaeota
CTG
Gln
>WENV170723998
LSQX01288774
173325
Euryarchaeota
TTT
Lys
>WENV170724032
LSQX01290450
45256
Euryarchaeota
GCT
Ser
>WENV170724159
LSQX01295456
147810
Euryarchaeota
CTT
Lys
>WENV170724217
LSQX01297578
339959
Euryarchaeota
>WENV170724321
LSQX01300829
45268
Euryarchaeota
CGA
Ser
>WENV170724366
LSQX01302579
389558
Euryarchaeota
CCG
Arg
>WENV170724468
LSQX01306467
45268
Euryarchaeota
CGA
Ser
>WENV170724477
LSQX01306886
339954
Euryarchaeota
>WENV170724606
LSQX01312133
238532
Euryarchaeota
TGC
Ala
>WENV170724893
LSQX01322447
45268
Euryarchaeota
CGA
Ser
>WENV170724961
LSQX01325067
119893
Euryarchaeota
CGA
Ser
>WENV170725054
LSQX01328967
339971
Euryarchaeota
GCC
Gly
>WENV170725069
LSQX01329381
339971
Euryarchaeota
GCC
Gly
>WENV170725254
LSQX01336477
127184
Euryarchaeota
CTC
Glu
>WENV170725435
LSQX01342336
339971
Euryarchaeota
GCC
Gly
>WENV170725530
LSQX01346077
348437
Euryarchaeota
GCG
Arg
>WENV170725595
LSQX01348856
45268
Euryarchaeota
CGA
Ser
>WENV170725601
LSQX01348985
47032
Euryarchaeota
TAA
Leu
>WENV170725631
LSQX01349946
127186
Euryarchaeota
>WENV170725756
LSQX01355291
358256
Euryarchaeota
>WENV170725899
LSQX01360154
339959
Euryarchaeota
>WENV170725900
LSQX01360154
238533
Euryarchaeota
TTG
Gln
>WENV170726270
LSQX01373328
238541
Euryarchaeota
GTT
Asn
>WENV170726282
LSQX01373848
253779
Euryarchaeota
>WENV170726344
LSQX01376300
147567
Euryarchaeota
GGC
Ala
>WENV170726865
LSQX01396524
339971
Euryarchaeota
GCC
Gly
>WENV170726913
LSQX01398651
147814
Euryarchaeota
TTT
Lys
>WENV170727048
LSQX01402792
127187
Euryarchaeota
>WENV170727055
LSQX01403059
133776
Euryarchaeota
TTC
Glu
>WENV170727056
LSQX01403059
133776
Euryarchaeota
TTC
Glu
>WENV170727127
LSQX01405805
45267
Euryarchaeota
GCT
Ser
>WENV170727201
LSQX01408421
127189
Euryarchaeota
CCT
Arg
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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