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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
173 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1016242
SRR023846.416479
281547
Alphaproteobacteria
CAT
Met
>SRA1016042
SRR023846.322411
281547
Alphaproteobacteria
CAT
Met
>SRA1016040
SRR023846.320228
654953
Alphaproteobacteria
GGT
Thr
>SRA1015561
SRR023846.112173
780161
Alphaproteobacteria
GCA
Cys
>SRA1015475
SRR023846.78135
780161
Alphaproteobacteria
GCA
Cys
>SRA1015299
SRR023846.6709
780161
Alphaproteobacteria
GCA
Cys
>SRA1015223
SRR023845.505925
780161
Alphaproteobacteria
GCA
Cys
>SRA1015126
SRR023845.469183
780161
Alphaproteobacteria
GCA
Cys
>SRA1014331
SRR023845.92155
780161
Alphaproteobacteria
GCA
Cys
>SRA1014294
SRR023845.77376
780161
Alphaproteobacteria
GCA
Cys
>SRA1016276
SRR023846.431452
112749
Alphaproteobacteria
CAG
Leu
>SRA1016446
SRR023846.499849
299732
Alphaproteobacteria
ACG
Arg
>SRA1016344
SRR023846.460208
299732
Alphaproteobacteria
ACG
Arg
>SRA1016343
SRR023846.459966
299732
Alphaproteobacteria
ACG
Arg
>SRA1016100
SRR023846.349637
299732
Alphaproteobacteria
ACG
Arg
>SRA1015934
SRR023846.269920
299732
Alphaproteobacteria
ACG
Arg
>SRA1015577
SRR023846.117294
299732
Alphaproteobacteria
ACG
Arg
>SRA1015473
SRR023846.77108
299732
Alphaproteobacteria
ACG
Arg
>SRA1015247
SRR023845.519248
299732
Alphaproteobacteria
ACG
Arg
>SRA1015112
SRR023845.464400
299732
Alphaproteobacteria
ACG
Arg
>SRA1015107
SRR023845.463803
299732
Alphaproteobacteria
ACG
Arg
>SRA1015043
SRR023845.433965
299732
Alphaproteobacteria
ACG
Arg
>SRA1015032
SRR023845.426310
299732
Alphaproteobacteria
ACG
Arg
>SRA1015013
SRR023845.423620
299732
Alphaproteobacteria
ACG
Arg
>SRA1014939
SRR023845.390992
299732
Alphaproteobacteria
ACG
Arg
>SRA1014849
SRR023845.343118
299732
Alphaproteobacteria
ACG
Arg
>SRA1014806
SRR023845.321104
299732
Alphaproteobacteria
ACG
Arg
>SRA1014798
SRR023845.319092
299732
Alphaproteobacteria
ACG
Arg
>SRA1014708
SRR023845.274457
299732
Alphaproteobacteria
ACG
Arg
>SRA1014455
SRR023845.147632
299732
Alphaproteobacteria
ACG
Arg
>SRA1014316
SRR023845.86860
299732
Alphaproteobacteria
ACG
Arg
>SRA1014306
SRR023845.83324
299732
Alphaproteobacteria
ACG
Arg
>SRA1014180
SRR023845.30025
299732
Alphaproteobacteria
ACG
Arg
>SRA1016502
SRR023846.534024
276125
Alphaproteobacteria
TAC
Val
>SRA1015543
SRR023846.105114
276125
Alphaproteobacteria
TAC
Val
>SRA1015851
SRR023846.227895
180430
Alphaproteobacteria
CAG
Leu
>SRA1016442
SRR023846.499061
655018
Alphaproteobacteria
TTC
Glu
>SRA1016374
SRR023846.469928
655018
Alphaproteobacteria
TTC
Glu
>SRA1016284
SRR023846.435684
655018
Alphaproteobacteria
TTC
Glu
>SRA1016208
SRR023846.403411
655018
Alphaproteobacteria
TTC
Glu
>SRA1016011
SRR023846.312029
655018
Alphaproteobacteria
TTC
Glu
>SRA1015950
SRR023846.279410
655018
Alphaproteobacteria
TTC
Glu
>SRA1015906
SRR023846.252350
655018
Alphaproteobacteria
TTC
Glu
>SRA1015751
SRR023846.181430
655018
Alphaproteobacteria
TTC
Glu
>SRA1015703
SRR023846.164979
655018
Alphaproteobacteria
TTC
Glu
>SRA1015644
SRR023846.143984
655018
Alphaproteobacteria
TTC
Glu
>SRA1015554
SRR023846.110187
655018
Alphaproteobacteria
TTC
Glu
>SRA1015528
SRR023846.98457
655018
Alphaproteobacteria
TTC
Glu
>SRA1015392
SRR023846.40535
655018
Alphaproteobacteria
TTC
Glu
>SRA1015307
SRR023846.11628
655018
Alphaproteobacteria
TTC
Glu
>SRA1015228
SRR023845.508007
655018
Alphaproteobacteria
TTC
Glu
>SRA1014521
SRR023845.179812
655018
Alphaproteobacteria
TTC
Glu
>SRA1014398
SRR023845.120628
655018
Alphaproteobacteria
TTC
Glu
>SRA1014284
SRR023845.70653
655018
Alphaproteobacteria
TTC
Glu
>SRA1014159
SRR023845.22356
655018
Alphaproteobacteria
TTC
Glu
>SRA1016024
SRR023846.315959
653591
Alphaproteobacteria
TTG
Gln
>SRA1016354
SRR023846.461743
454638
Alphaproteobacteria
GTT
Asn
>SRA1016192
SRR023846.392926
454638
Alphaproteobacteria
GTT
Asn
>SRA1015942
SRR023846.274914
454638
Alphaproteobacteria
GTT
Asn
>SRA1015292
SRR023846.1653
454638
Alphaproteobacteria
GTT
Asn
>SRA1014337
SRR023845.94447
454638
Alphaproteobacteria
GTT
Asn
>SRA1015654
SRR023846.146237
13460
Alphaproteobacteria
GCT
Ser
>SRA1015103
SRR023845.461883
13460
Alphaproteobacteria
GCT
Ser
>SRA1016400
SRR023846.479835
453948
Alphaproteobacteria
GGC
Ala
>SRA1016228
SRR023846.409399
453948
Alphaproteobacteria
GGC
Ala
>SRA1015286
SRR023845.541943
453948
Alphaproteobacteria
GGC
Ala
>SRA1015073
SRR023845.448435
453948
Alphaproteobacteria
GGC
Ala
>SRA1014609
SRR023845.226132
453948
Alphaproteobacteria
GGC
Ala
>SRA1014492
SRR023845.163759
453948
Alphaproteobacteria
GGC
Ala
>SRA1014442
SRR023845.144308
453948
Alphaproteobacteria
GGC
Ala
>SRA1016168
SRR023846.377396
270887
Alphaproteobacteria
TGG
Pro
>SRA1014141
SRR023845.16132
270887
Alphaproteobacteria
TGG
Pro
>SRA1016513
SRR023846.539317
273554
Alphaproteobacteria
CCG
Arg
>SRA1016402
SRR023846.481403
273554
Alphaproteobacteria
CCG
Arg
>SRA1016224
SRR023846.408631
273554
Alphaproteobacteria
CCG
Arg
>SRA1016206
SRR023846.402734
273554
Alphaproteobacteria
CCG
Arg
>SRA1015433
SRR023846.55660
273554
Alphaproteobacteria
CCG
Arg
>SRA1015135
SRR023845.472873
273554
Alphaproteobacteria
CCG
Arg
>SRA1015097
SRR023845.459061
273554
Alphaproteobacteria
CCG
Arg
>SRA1015011
SRR023845.421866
273554
Alphaproteobacteria
CCG
Arg
>SRA1014980
SRR023845.408711
273554
Alphaproteobacteria
CCG
Arg
>SRA1014603
SRR023845.220906
273554
Alphaproteobacteria
CCG
Arg
>SRA1014556
SRR023845.197854
273554
Alphaproteobacteria
CCG
Arg
>SRA1014444
SRR023845.144546
273554
Alphaproteobacteria
CCG
Arg
>SRA1014330
SRR023845.91857
273554
Alphaproteobacteria
CCG
Arg
>SRA1016486
SRR023846.526333
321548
Alphaproteobacteria
GTG
His
>SRA1015900
SRR023846.248361
321548
Alphaproteobacteria
GTG
His
>SRA1015854
SRR023846.230264
321548
Alphaproteobacteria
GTG
His
>SRA1015780
SRR023846.197294
321548
Alphaproteobacteria
GTG
His
>SRA1016299
SRR023846.439779
452755
Alphaproteobacteria
TAC
Val
>SRA1015874
SRR023846.236775
452755
Alphaproteobacteria
TAC
Val
>SRA1015704
SRR023846.165885
452755
Alphaproteobacteria
TAC
Val
>SRA1015050
SRR023845.436617
452755
Alphaproteobacteria
TAC
Val
>SRA1015003
SRR023845.420264
452755
Alphaproteobacteria
TAC
Val
>SRA1014644
SRR023845.239045
452755
Alphaproteobacteria
TAC
Val
>SRA1014615
SRR023845.228543
452755
Alphaproteobacteria
TAC
Val
>SRA1016083
SRR023846.341737
218042
Alphaproteobacteria
GAG
Leu
>SRA1015465
SRR023846.70180
455821
Alphaproteobacteria
CTT
Lys
>SRA1015924
SRR023846.264539
786788
Alphaproteobacteria
CTG
Gln
>SRA1014548
SRR023845.193770
786788
Alphaproteobacteria
CTG
Gln
>SRA1015844
SRR023846.224748
281332
Alphaproteobacteria
CGG
Pro
>SRA1015979
SRR023846.292388
457259
Alphaproteobacteria
TGT
Thr
>SRA1014791
SRR023845.316637
457259
Alphaproteobacteria
TGT
Thr
>SRA1016115
SRR023846.353221
686293
Alphaproteobacteria
TTC
Glu
>SRA1015955
SRR023846.282969
686293
Alphaproteobacteria
TTC
Glu
>SRA1015580
SRR023846.117646
686293
Alphaproteobacteria
TTC
Glu
>SRA1015391
SRR023846.40264
686293
Alphaproteobacteria
TTC
Glu
>SRA1015384
SRR023846.38383
14158
Alphaproteobacteria
GCT
Ser
>SRA1015800
SRR023846.205004
273160
Alphaproteobacteria
ACG
Arg
>SRA1014936
SRR023845.390250
273160
Alphaproteobacteria
ACG
Arg
>SRA1016531
SRR023846.545059
780162
Alphaproteobacteria
TCC
Gly
>SRA1016258
SRR023846.422948
780162
Alphaproteobacteria
TCC
Gly
>SRA1016174
SRR023846.379156
780162
Alphaproteobacteria
TCC
Gly
>SRA1016173
SRR023846.378591
780162
Alphaproteobacteria
TCC
Gly
>SRA1016167
SRR023846.377201
780162
Alphaproteobacteria
TCC
Gly
>SRA1015740
SRR023846.177278
780162
Alphaproteobacteria
TCC
Gly
>SRA1015067
SRR023845.446579
780162
Alphaproteobacteria
TCC
Gly
>SRA1014790
SRR023845.316249
780162
Alphaproteobacteria
TCC
Gly
>SRA1014717
SRR023845.278298
780162
Alphaproteobacteria
TCC
Gly
>SRA1014272
SRR023845.66897
780162
Alphaproteobacteria
TCC
Gly
>SRA1014111
SRR023845.4021
780162
Alphaproteobacteria
TCC
Gly
>SRA1016472
SRR023846.514987
283396
Alphaproteobacteria
GAT
Ile
>SRA1016329
SRR023846.454816
283396
Alphaproteobacteria
GAT
Ile
>SRA1016190
SRR023846.392055
283396
Alphaproteobacteria
GAT
Ile
>SRA1016107
SRR023846.350550
283396
Alphaproteobacteria
GAT
Ile
>SRA1015808
SRR023846.208070
283396
Alphaproteobacteria
GAT
Ile
>SRA1015679
SRR023846.155789
283396
Alphaproteobacteria
GAT
Ile
>SRA1015653
SRR023846.146133
283396
Alphaproteobacteria
GAT
Ile
>SRA1015439
SRR023846.58136
283396
Alphaproteobacteria
GAT
Ile
>SRA1015432
SRR023846.54250
283396
Alphaproteobacteria
GAT
Ile
>SRA1015372
SRR023846.32573
283396
Alphaproteobacteria
GAT
Ile
>SRA1015325
SRR023846.18449
283396
Alphaproteobacteria
GAT
Ile
>SRA1014845
SRR023845.340814
283396
Alphaproteobacteria
GAT
Ile
>SRA1014652
SRR023845.242059
283396
Alphaproteobacteria
GAT
Ile
>SRA1014305
SRR023845.82783
283396
Alphaproteobacteria
GAT
Ile
>SRA1014213
SRR023845.41383
283396
Alphaproteobacteria
GAT
Ile
>SRA1016071
SRR023846.337316
655031
Alphaproteobacteria
CAC
Val
>SRA1015244
SRR023845.517270
655031
Alphaproteobacteria
CAC
Val
>SRA1016459
SRR023846.508664
457103
Alphaproteobacteria
CCA
Trp
>SRA1016144
SRR023846.367182
780884
Alphaproteobacteria
CTG
Gln
>SRA1015747
SRR023846.180121
503534
Alphaproteobacteria
TTT
Lys
>SRA1016553
SRR023846.560952
30705
Alphaproteobacteria
GCT
Ser
>SRA1016103
SRR023846.349894
30705
Alphaproteobacteria
GCT
Ser
>SRA1016005
SRR023846.305932
30705
Alphaproteobacteria
GCT
Ser
>SRA1015526
SRR023846.97550
30705
Alphaproteobacteria
GCT
Ser
>SRA1016222
SRR023846.407411
46270
Alphaproteobacteria
TGA
Ser
>SRA1015894
SRR023846.246944
46270
Alphaproteobacteria
TGA
Ser
>SRA1015665
SRR023846.151055
779636
Alphaproteobacteria
CTG
Gln
>SRA1014526
SRR023845.184615
779636
Alphaproteobacteria
CTG
Gln
>SRA1015409
SRR023846.48685
653593
Alphaproteobacteria
GCC
Gly
>SRA1014113
SRR023845.4838
653593
Alphaproteobacteria
GCC
Gly
>SRA1016381
SRR023846.472863
301138
Alphaproteobacteria
GAT
Ile
>SRA1014564
SRR023845.201923
52786
Alphaproteobacteria
CGA
Ser
>SRA1014951
SRR023845.395323
456891
Alphaproteobacteria
CGT
Thr
>SRA1014950
SRR023845.394694
667632
Alphaproteobacteria
GGT
Thr
>SRA1014166
SRR023845.23678
667632
Alphaproteobacteria
GGT
Thr
>SRA1015282
SRR023845.539099
45932
Alphaproteobacteria
GGA
Ser
>SRA1015274
SRR023845.535693
45932
Alphaproteobacteria
GGA
Ser
>SRA1015253
SRR023845.520122
45932
Alphaproteobacteria
GGA
Ser
>SRA1014726
SRR023845.284720
45932
Alphaproteobacteria
GGA
Ser
>SRA1014677
SRR023845.258071
45932
Alphaproteobacteria
GGA
Ser
>SRA1014579
SRR023845.208726
45932
Alphaproteobacteria
GGA
Ser
>SRA1014530
SRR023845.186302
45932
Alphaproteobacteria
GGA
Ser
>SRA1014324
SRR023845.89083
276129
Alphaproteobacteria
CAT
Met
>SRA1015053
SRR023845.441448
454642
Alphaproteobacteria
TAC
Val
>SRA1014816
SRR023845.325393
482436
Alphaproteobacteria
TGT
Thr
>SRA1014268
SRR023845.66785
12502
Alphaproteobacteria
GCT
Ser
>SRA1015092
SRR023845.457281
270896
Alphaproteobacteria
CCG
Arg
>SRA1014204
SRR023845.38072
452258
Alphaproteobacteria
CAT
Met
>SRA1014736
SRR023845.288735
274191
Alphaproteobacteria
TCT
Arg
>SRA1014297
SRR023845.79126
654998
Alphaproteobacteria
GCC
Gly
>SRA1014872
SRR023845.355022
653539
Alphaproteobacteria
GAC
Val
>SRA1014336
SRR023845.94116
454361
Alphaproteobacteria
CCA
Trp
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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