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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
Unclassified
HIT:
83 sequence(s).
[Important Notice]
tRNA genes in Archaeal genomes were obtained from
"SPLITSdb"
(1, 2).
1. Sugahara et al. In Silico Biology,
"6, 0039, 2006"
.
2. Sugahara et al. Molecular Biology and Evolution,
"25, 2709-2716, 2008"
.
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
SPLITSdb
Decision
>C153000867
CP010424
Unclassified
archaeon GW2011_AR10
29124
29196
+
Thr
CGT
-
--
¡û
>CL171500013
CP010424
Unclassified
archaeon GW2011_AR10
47460
47576
+
Gln
TTG
-
--
¡û
>CL172100014
CP010424
Unclassified
archaeon GW2011_AR10
66990
67234
+
Pro
TGG
-
--
¡û
>C151068541
CP010424
Unclassified
archaeon GW2011_AR10
98864
98948
+
Leu
TAG
-
--
¡û
>C153000868
CP010424
Unclassified
archaeon GW2011_AR10
112864
112936
+
Val
CAC
-
--
¡û
>C151068542
CP010424
Unclassified
archaeon GW2011_AR10
164396
164468
+
Ala
TGC
-
--
¡û
>CL171000017
CP010424
Unclassified
archaeon GW2011_AR10
179762
179672
-
Arg
TCT
-
--
¡û
>C151068543
CP010424
Unclassified
archaeon GW2011_AR10
182649
182735
+
Leu
GAG
-
--
¡û
>CL170500016
CP010424
Unclassified
archaeon GW2011_AR10
191592
191391
-
Ser
TGA
-
--
¡û
>C151068544
CP010424
Unclassified
archaeon GW2011_AR10
351492
351566
+
Trp
CCA
-
--
¡û
>CL171300030
CP010424
Unclassified
archaeon GW2011_AR10
394362
394181
-
Ser
GCT
-
--
¡û
>CL171300031
CP010424
Unclassified
archaeon GW2011_AR10
394363
392653
-
Ser
GCT
-
--
¡û
>C151068553
CP010424
Unclassified
archaeon GW2011_AR10
397311
397238
-
Asn
GTT
-
--
¡û
>C153000870
CP010424
Unclassified
archaeon GW2011_AR10
411820
411748
-
Ala
CGC
-
--
¡û
>C151068552
CP010424
Unclassified
archaeon GW2011_AR10
602487
602413
-
Gln
CTG
-
--
¡û
>C151068545
CP010424
Unclassified
archaeon GW2011_AR10
707312
707387
+
Arg
GCG
-
--
¡û
>C151068546
CP010424
Unclassified
archaeon GW2011_AR10
710715
710788
+
His
GTG
-
--
¡û
>C151068547
CP010424
Unclassified
archaeon GW2011_AR10
719101
719176
+
Glu
CTC
-
--
¡û
>C151068548
CP010424
Unclassified
archaeon GW2011_AR10
719264
719339
+
Thr
TGT
-
--
¡û
>CL171800016
CP010424
Unclassified
archaeon GW2011_AR10
738363
738498
+
Asp
GTC
-
--
¡û
>C151068549
CP010424
Unclassified
archaeon GW2011_AR10
985493
985567
+
Lys
TTT
-
--
¡û
>C151068551
CP010424
Unclassified
archaeon GW2011_AR10
1046636
1046566
-
Gly
TCC
-
--
¡û
>C151068550
CP010424
Unclassified
archaeon GW2011_AR10
1075221
1075294
+
Arg
TCG
-
--
¡û
>CL171100015
CP010424
Unclassified
archaeon GW2011_AR10
1187101
1186944
-
Cys
GCA
-
--
¡û
>C151068565
CP010426
Unclassified
archaeon GW2011_AR20
24533
24461
-
Cys
GCA
-
--
¡û
>CL171000018
CP010426
Unclassified
archaeon GW2011_AR20
24622
24536
-
Arg
TCT
-
--
¡û
>C151068564
CP010426
Unclassified
archaeon GW2011_AR20
47140
47067
-
Arg
TCG
-
--
¡û
>C151068554
CP010426
Unclassified
archaeon GW2011_AR20
100707
100780
+
Thr
CGT
-
--
¡û
>C151068555
CP010426
Unclassified
archaeon GW2011_AR20
129902
129975
+
Ala
GGC
-
--
¡û
>C153000873
CP010426
Unclassified
archaeon GW2011_AR20
129976
130051
+
Ala
CGC
-
--
¡û
>C151068556
CP010426
Unclassified
archaeon GW2011_AR20
135863
135936
+
Met
CAT
-
--
¡û
>C151068563
CP010426
Unclassified
archaeon GW2011_AR20
174877
174805
-
Val
GAC
-
--
¡û
>C151068562
CP010426
Unclassified
archaeon GW2011_AR20
179393
179321
-
Gln
TTG
-
--
¡û
>C151068557
CP010426
Unclassified
archaeon GW2011_AR20
302172
302243
+
Glu
CTC
-
--
¡û
>C151068558
CP010426
Unclassified
archaeon GW2011_AR20
302884
302956
+
Val
CAC
-
--
¡û
>CL170500017
CP010426
Unclassified
archaeon GW2011_AR20
382344
382440
+
Ser
TGA
-
--
¡û
>C151068561
CP010426
Unclassified
archaeon GW2011_AR20
517505
517435
-
Trp
CCA
-
--
¡û
>C151068560
CP010426
Unclassified
archaeon GW2011_AR20
620454
620379
-
Val
TAC
-
--
¡û
>CL172000016
CP010426
Unclassified
archaeon GW2011_AR20
658787
658700
-
His
GTG
-
--
¡û
>C151068559
CP010426
Unclassified
archaeon GW2011_AR20
749646
749572
-
Asp
GTC
-
--
¡û
>C151003942
CP002988
Unclassified
halophilic archaeon DL31
31576
31492
-
Leu
TAG
[Ensembl]
--
¡û
>C151003903
CP002988
Unclassified
halophilic archaeon DL31
103002
103074
+
Thr
CGT
[Ensembl]
--
¡û
>C151003941
CP002988
Unclassified
halophilic archaeon DL31
205032
204960
-
Ala
CGC
[Ensembl]
--
¡û
>C151003904
CP002988
Unclassified
halophilic archaeon DL31
224978
225051
+
Asp
GTC
[Ensembl]
--
¡û
>C151003905
CP002988
Unclassified
halophilic archaeon DL31
329023
329094
+
Ala
GGC
[Ensembl]
--
¡û
>C151003906
CP002988
Unclassified
halophilic archaeon DL31
593981
594058
+
Met
CAT
[Ensembl]
--
¡û
>CL170700008
CP002988
Unclassified
halophilic archaeon DL31
808575
808399
-
Trp
CCA
[Ensembl]
--
¡û
>C151003940
CP002988
Unclassified
halophilic archaeon DL31
819222
819138
-
Leu
CAG
[Ensembl]
--
¡û
>C151003939
CP002988
Unclassified
halophilic archaeon DL31
821728
821643
-
Ser
GCT
[Ensembl]
--
¡û
>C151003907
CP002988
Unclassified
halophilic archaeon DL31
828550
828632
+
Ser
TGA
[Ensembl]
--
¡û
>C151003908
CP002988
Unclassified
halophilic archaeon DL31
914205
914279
+
Glu
CTC
[Ensembl]
--
¡û
>C151003938
CP002988
Unclassified
halophilic archaeon DL31
933127
933056
-
Ala
TGC
[Ensembl]
--
¡û
>C151003937
CP002988
Unclassified
halophilic archaeon DL31
951875
951801
-
Tyr
GTA
[Ensembl]
--
¡û
>C151003936
CP002988
Unclassified
halophilic archaeon DL31
1013533
1013459
-
Glu
TTC
[Ensembl]
--
¡û
>C151003935
CP002988
Unclassified
halophilic archaeon DL31
1098745
1098660
-
Leu
CAA
[Ensembl]
--
¡û
>C151003909
CP002988
Unclassified
halophilic archaeon DL31
1105094
1105179
+
Leu
GAG
[Ensembl]
--
¡û
>C151003934
CP002988
Unclassified
halophilic archaeon DL31
1175504
1175431
-
Lys
TTT
[Ensembl]
--
¡û
>C151003933
CP002988
Unclassified
halophilic archaeon DL31
1214798
1214714
-
Leu
TAA
[Ensembl]
--
¡û
>C151003910
CP002988
Unclassified
halophilic archaeon DL31
1329071
1329146
+
Val
CAC
[Ensembl]
--
¡û
>C151003911
CP002988
Unclassified
halophilic archaeon DL31
1376302
1376377
+
Val
GAC
[Ensembl]
--
¡û
>C151003932
CP002988
Unclassified
halophilic archaeon DL31
1542803
1542727
-
Arg
TCG
[Ensembl]
--
¡û
>C151003931
CP002988
Unclassified
halophilic archaeon DL31
1578932
1578862
-
Gly
TCC
[Ensembl]
--
¡û
>C151003912
CP002988
Unclassified
halophilic archaeon DL31
1587061
1587133
+
Arg
CCT
[Ensembl]
--
¡û
>C151003913
CP002988
Unclassified
halophilic archaeon DL31
1701952
1702022
+
Gly
GCC
[Ensembl]
--
¡û
>C151003930
CP002988
Unclassified
halophilic archaeon DL31
1825120
1825046
-
Lys
CTT
[Ensembl]
--
¡û
>C151003929
CP002988
Unclassified
halophilic archaeon DL31
1930620
1930550
-
Gly
CCC
[Ensembl]
--
¡û
>C151003914
CP002988
Unclassified
halophilic archaeon DL31
1933257
1933328
+
Thr
GGT
[Ensembl]
--
¡û
>C151003928
CP002988
Unclassified
halophilic archaeon DL31
2019863
2019793
-
Pro
GGG
[Ensembl]
--
¡û
>C151003915
CP002988
Unclassified
halophilic archaeon DL31
2031991
2032069
+
Ile
GAT
[Ensembl]
--
¡û
>C151003927
CP002988
Unclassified
halophilic archaeon DL31
2126848
2126773
-
Cys
GCA
[Ensembl]
--
¡û
>C151003926
CP002988
Unclassified
halophilic archaeon DL31
2130384
2130313
-
Ala
TGC
[Ensembl]
--
¡û
>CL171000011
CP002988
Unclassified
halophilic archaeon DL31
2249241
2249141
-
Arg
TCT
[Ensembl]
--
¡û
>C151003925
CP002988
Unclassified
halophilic archaeon DL31
2309676
2309591
-
Ser
CGA
[Ensembl]
--
¡û
>C151003916
CP002988
Unclassified
halophilic archaeon DL31
2401499
2401580
+
Ser
GGA
[Ensembl]
--
¡û
>C151003924
CP002988
Unclassified
halophilic archaeon DL31
2492225
2492152
-
Gln
CTG
[Ensembl]
--
¡û
>C151003923
CP002988
Unclassified
halophilic archaeon DL31
2558619
2558542
-
Met
CAT
[Ensembl]
--
¡û
>C151003922
CP002988
Unclassified
halophilic archaeon DL31
2558777
2558705
-
Asn
GTT
[Ensembl]
--
¡û
>C151003921
CP002988
Unclassified
halophilic archaeon DL31
2562402
2562330
-
Arg
GCG
[Ensembl]
--
¡û
>C151003917
CP002988
Unclassified
halophilic archaeon DL31
2665443
2665514
+
His
GTG
[Ensembl]
--
¡û
>C151003918
CP002988
Unclassified
halophilic archaeon DL31
2671812
2671884
+
Pro
TGG
[Ensembl]
--
¡û
>C151003919
CP002988
Unclassified
halophilic archaeon DL31
2686069
2686143
+
Val
TAC
[Ensembl]
--
¡û
>C151003920
CP002988
Unclassified
halophilic archaeon DL31
2692816
2692889
+
Phe
GAA
[Ensembl]
--
¡û
>CL171500011
CP002988
Unclassified
halophilic archaeon DL31
2786924
2787026
+
Gln
TTG
[Ensembl]
--
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
SPLITSdb
Decision
Download Sequence
View ClustalW result
BACK